Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00117 ATGAAGATGGTTATGGGTGGCCAAATTTTCGGTGCTGGTGTTATTATTGTTAGTTTCTTTCTGCTGATTCTCTGTGGCATGGTTTGTGGGACTGATAGTGATATATTCTGCTTGAAAAGTGTAAAGAGTGCACTTGAGGACCCCTACAATTATTTGCAATCCTGGAATTTCAATAACAACACAGAAGGGTATATATGCAAGTTTACTGGGGTTGAGTGTTGGCACCCTGATGAGAACAAGGTCTTGAATCTCAAACTGTCCAACATGGGACTCAAGGGCCAGTTTCCTCGCGGCATTCAAAATTGCACAAGCATGACAGGATTAGATTTTTCGCTTAACAGACTCTCTAAAACCATTCCCACCGATATATCCACACTTCTTACATTTGTGACAACTCTTGATCTATCTTCAAATGATTTTACTGGGGAGATACCTGCATCCCTTTCAAATTGTACCTATCTTAATTCTCTTAGACTTGACCAAAACCAACTCACTGGTCAAATTCCTGCAAACTTGAGTCAGCTCCCGCGGCTTAAGTCGTTTAGTGTTGCCAATAATCTTTTGACAGGGCCAGTTCCACCCTTTAGAGATGGTGTGGCTAATGCAGAAAGTTATGCAAATAATTCAGGCCTCTGTGGTCGTCCCTTGGATGCTTGCCAGGCCGGGTCTTCAAAGAGTAACACTGCTGTTATAGCTGGAGCAGCTGTTGGTGGTGTGACTGTTGCAGCATTAGGTTTGGGCATTGGAATGTTCTTCTACGTGCGCCGTATTTCTTATAGGAAGAAGGAAGAGGACCCTGAAGGAAACAAGTGGGCAAGAAGTCTAAAGGGAACTAAAACAATAAAGGTTTCTATGTTTGAGAAGTCAATTTCAAAAATGAACTTGAATGATCTCATGAAGGCTACTAATAACTTCAGCAAAAGCAATATTATTGGGACTGGAAGATCAGGAACTGTTTACAAAGCTGTCCTTCACGATGGCACATCACTCATGGTTAAGAGATTGCAGGAATCTCATCACTCAGAAAAAGAATTTCTGTCTGAGATGACTACACTAGGGTCTGTCAAACATCGTAACTTGGTTCCTCTTTTAGGTTTTTGTGTAGCTAAAAAGGAGAGGCTTTTGGTCTATAAAAATATGCCAAATGGTACCCTCCATGATCAACTACATCCTGATACTGGTGCATGCACCATGGATTGGCCTAAAAGGCTCAAAATTGCAATTGGAGCAGCCAAAGGATTACAATGGCTTCATCATAGCTGCAATCCCCGCATTATCCACCGAAACATAAGCTCTAAGTGCATCTTGTTAGATGCTGATTTTGAGCCCAAGATTTCTGATTTTGGCCTTGCTAGATTGATGAACCCAATTGATACACATTTGAGTACTTTTGTGAATGGGGAGTTTGGGGATTTAGGTTATGTTGCTCCTGAATATACAAAAACTTTGGTGGCTACTCCTAAAGGGGATGTTTATAGCTTCGGGACCGTGCTTCTCGAGTTGGTGACAGGTGAAAGACCTACTCATGTGGCTAAAGCCCCAGAAACTTTTAAAGGAAATTTGGTAGAATGGATTACACAGCAATCTAGCAATGCAAAACTGCATGATGTCATTGATGAATCACTAGTTGGGAAGGGTGTAGACCAGGAGCTTTTCCAATTTCTGAAGGTTGCATGCAACTGTGTTATAGCAATGCCAAAGGAGAGGCCTACCATGTTTGAAGTATACCAGCTTCTAAGAGCCATTGGGACTAATTATAATTTCACAACTGAGGATGAGATCATGCTGCCTATAGACATTGGTGATGCTGATAACTTAGGAGAACTTATAGTTGCTCGAGAGGGACTGGGACATGATTGA 1860 0.4172 MKMVMGGQIFGAGVIIVSFFLLILCGMVCGTDSDIFCLKSVKSALEDPYNYLQSWNFNNNTEGYICKFTGVECWHPDENKVLNLKLSNMGLKGQFPRGIQNCTSMTGLDFSLNRLSKTIPTDISTLLTFVTTLDLSSNDFTGEIPASLSNCTYLNSLRLDQNQLTGQIPANLSQLPRLKSFSVANNLLTGPVPPFRDGVANAESYANNSGLCGRPLDACQAGSSKSNTAVIAGAAVGGVTVAALGLGIGMFFYVRRISYRKKEEDPEGNKWARSLKGTKTIKVSMFEKSISKMNLNDLMKATNNFSKSNIIGTGRSGTVYKAVLHDGTSLMVKRLQESHHSEKEFLSEMTTLGSVKHRNLVPLLGFCVAKKERLLVYKNMPNGTLHDQLHPDTGACTMDWPKRLKIAIGAAKGLQWLHHSCNPRIIHRNISSKCILLDADFEPKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYTKTLVATPKGDVYSFGTVLLELVTGERPTHVAKAPETFKGNLVEWITQQSSNAKLHDVIDESLVGKGVDQELFQFLKVACNCVIAMPKERPTMFEVYQLLRAIGTNYNFTTEDEIMLPIDIGDADNLGELIVAREGLGHD 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00117 619 Gene3D Phosphorylase Kinase; domain 1 266 378 - -
Pumo5g00117 619 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 266 379 - -
Pumo5g00117 619 Gene3D Transferase(Phosphotransferase) domain 1 380 597 - -
Pumo5g00117 619 SUPERFAMILY L domain-like 32 199 - -
Pumo5g00117 619 Pfam Protein tyrosine and serine/threonine kinase 308 578 IPR001245 GO:0004672|GO:0006468
Pumo5g00117 619 Pfam Leucine rich repeat N-terminal domain 32 74 IPR013210 -
Pumo5g00117 619 SUPERFAMILY Protein kinase-like (PK-like) 281 579 IPR011009 -
Pumo5g00117 619 ProSiteProfiles Protein kinase domain profile. 305 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g00117 619 FunFam Leucine-rich repeat receptor-like protein kinase 31 194 - -
Pumo5g00117 619 Gene3D Ribonuclease Inhibitor 32 221 IPR032675 -
Pumo5g00117 619 CDD STKc_IRAK 311 579 - -
Pumo5g00117 619 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 32 193 - -
Pumo5g00117 619 FunFam Leucine-rich repeat receptor-like protein kinase 380 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00117 Pumo-Chr5 3968607 3972371 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00117 20 593 Receptor kinase-like Gene Family AT3G28450 45.876 0.0 535
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Pumo5g00117 PK_Tyr_Ser-Thr 1.1e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00117 - - gmx:100817267 1137.87