Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00110 ATGGCCGGCATAGACTTGGGTTCAGCATCACATTTTGTTCATCATCGCCTTCAACGCCCTGACCTTGAAGACGATGAGAACCAACAAGACCAAGACAACAACGTTAACGATCATGAAGGGCTTGACCTAGTTTCACCAAATCAAGGTCCTGGTGATGTTGTTGGTCGCAGGCCAAGAGGAAGGCCCCCAGGTTCAAAGAACAAGCCAAAACCACCAGTTATCATCACAAGAGAGAGTGCAAACACCCTTAGGGCTCACATCCTTGAAGTTAGTAGTGGTTGTGATGTCTTTGAATCCGTCGCTACCTATGCAAGGAAGCGACAAAGAGGGATCTGTGTCCTTAGTGGAAGTGGCACCGTGACTAACGTGACGTTACGGCAGCCGGCCGCAGCCGGTGCCGTCGTCACGCTGCACGGAAGGTTCGAGATCCTGTCTTTGTCAGGATCATTCCTCCCACCTCCAGCTCCACCAGGGGCCACAAGTTTGACCGTGTTCCTTGGTGGAGGACAGGGTCAAGTGGTGGGAGGAAATGTTGTTGGTCCTTTGGTGGCTTCTGGGCCTGTTATTGTCATTGCTTCATCATTTACTAATGTAGCATATGAGAGGTTGCCCTTGGATGAAGAGGAATCTATGCAGATGCAACAAGGGCAATCATCTGCTGGTGGTGGTAGCGGTGGCAGTGGTGGTGGAGTTAGTAATAACTCTTTTCCGGACCCGTCTTCCGGGCTTCCATTCTTCAATTTGCCCCTAAACATGCCTCAGTTACCTGTTGATGGTTGGGCTGGGAACTCTGGTGGAAGGCAATCTTACTGA 813 0.508 MAGIDLGSASHFVHHRLQRPDLEDDENQQDQDNNVNDHEGLDLVSPNQGPGDVVGRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVSSGCDVFESVATYARKRQRGICVLSGSGTVTNVTLRQPAAAGAVVTLHGRFEILSLSGSFLPPPAPPGATSLTVFLGGGQGQVVGGNVVGPLVASGPVIVIASSFTNVAYERLPLDEEESMQMQQGQSSAGGGSGGSGGGVSNNSFPDPSSGLPFFNLPLNMPQLPVDGWAGNSGGRQSY 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00110 270 MobiDBLite consensus disorder prediction 210 241 - -
Pumo5g00110 270 Pfam Plants and Prokaryotes Conserved (PCC) domain 84 197 IPR005175 -
Pumo5g00110 270 SUPERFAMILY AF0104/ALDC/Ptd012-like 80 213 - -
Pumo5g00110 270 MobiDBLite consensus disorder prediction 1 74 - -
Pumo5g00110 270 CDD DUF296 84 159 IPR005175 -
Pumo5g00110 270 PIRSF ESCAROLA 3 266 IPR014476 GO:0003680
Pumo5g00110 270 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 26 224 IPR014476 GO:0003680
Pumo5g00110 270 MobiDBLite consensus disorder prediction 208 248 - -
Pumo5g00110 270 Gene3D - 83 218 - -
Pumo5g00110 270 FunFam AT-hook motif nuclear-localized protein 83 210 - -
Pumo5g00110 270 ProSiteProfiles PPC domain profile profile. 80 217 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00110 Pumo-Chr5 3884162 3885954 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00110 1 267 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 64.120 9.08e-99 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00110 - - gmx:100814613 429.098