Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00092 ATGGCCTCCCCTTCTTCCCCCACCGACTCCAACCCTCCCTCCGCCGTGCCCCTCCCTCTCCCGGCCCCGCCTGCCACCTCCTCCCGGCGGCTCCCGCCGCCATGCTGGACCCCGGAGGAAACCGCCGCCCTCATCGACGCCTACCGCGACAAATGGTACTCCCTCGGCCGCACCAACTTGAAAGCCACCCACTGGCAAGAGGTGGCGGAGGCCATCACGGCGCAGTGCCCCAACGCCTCCCCCACGGCGAAAACCGCCGTCCAGTGCCGCCACAAGATGGAGAAGCTCCGCAAACGCTACCGCACCGAAATCCAACGCCTCCGCAACCTCCCCCTCCCCCGCATCATCAACAACACCGCCAACAACAATTCCCCTTCCTCATGGGTCCACTTCAAATCCATGGACTCCATGGAAAAAGGCCCCAACAACAAACCCCACACCGACAACAACAACAACCTCAATTTCCACGACGACGACGTAGACGACGACGATCTGTACGAGGAATTCAAAAACGCCCCCGGATCCAACACCAGAAGCCTCAACAAGCTCTACAAGAACGGATTCAATTCGGGCGGTTCCGGATCCGGGTCTGGTTTCCGGATCCGGATCCCGGCTGGGGTGGAACACCATACGTCGTCGTCTAATAAGTTTTTTACCAGCCCTCCCCATCCAGGGATGGTGCCACGTGGCGGCGCGAGCAACGGCGGCGGCGTGAAGAGGGAGCGCGAGAGGGACGCGGTGGCGGAGATGGTGGGCGCGATCAAGGTCCTGCGCGACGGGTTCGTGAGGATGGAGCAGATGAAGATGGAGATGGCGAGGGAGATCGAGAGCATGCGGATGGAGATGGAGATGAAGCGCACCGAGATGATCCTGGACTCGCAGCAGAGGATTGTCGAGGCTTTTGCTAGAGCCGTTTCGCAGAAGAGGAGCAAGGGCAAGTCCACGCCCTCGCCGTCATCGCAACCGTAG 969 0.6171 MASPSSPTDSNPPSAVPLPLPAPPATSSRRLPPPCWTPEETAALIDAYRDKWYSLGRTNLKATHWQEVAEAITAQCPNASPTAKTAVQCRHKMEKLRKRYRTEIQRLRNLPLPRIINNTANNNSPSSWVHFKSMDSMEKGPNNKPHTDNNNNLNFHDDDVDDDDLYEEFKNAPGSNTRSLNKLYKNGFNSGGSGSGSGFRIRIPAGVEHHTSSSNKFFTSPPHPGMVPRGGASNGGGVKRERERDAVAEMVGAIKVLRDGFVRMEQMKMEMAREIESMRMEMEMKRTEMILDSQQRIVEAFARAVSQKRSKGKSTPSPSSQP 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00092 322 Coils Coil 268 288 - -
Pumo5g00092 322 Gene3D - 36 102 - -
Pumo5g00092 322 SMART 118neu2 43 142 IPR006578 -
Pumo5g00092 322 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 12 307 IPR044823 -
Pumo5g00092 322 MobiDBLite consensus disorder prediction 211 238 - -
Pumo5g00092 322 MobiDBLite consensus disorder prediction 118 155 - -
Pumo5g00092 322 Coils Coil 90 110 - -
Pumo5g00092 322 MobiDBLite consensus disorder prediction 1 34 - -
Pumo5g00092 322 ProSiteProfiles Myb-like domain profile. 36 97 IPR001005 -
Pumo5g00092 322 FunFam Trihelix transcription factor ASIL2 36 102 - -
Pumo5g00092 322 Pfam Myb/SANT-like DNA-binding domain 34 137 IPR044822 -
Pumo5g00092 322 MobiDBLite consensus disorder prediction 10 31 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00092 Pumo-Chr5 3697649 3700027 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00092 35 140 Trihelix Transcription Factor Family AT1G54060 32.407 7.37e-11 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pumo5g00092 Myb_DNA-bind_4 2.7e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00092 - - gmx:102665993 478.404