Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00090 ATGCCTCCGAGAATAGTGAAGAGAGGTGCTGCGGCGAAGAGGACATCGAGGGGATCCTCAAAGGCTGCACCTGAGAATCAGCATGAGCCTGAAACCGCGGAAGTGGTTGTGAAAAATAATGAAGAAAATTCAGTTGTTGATGCTGGGGTGGAAGAGAAGCCCGTTTATGTGGAGCAAGAACATGAGGAAGTGCCAAATGGGTCGGCTAAGGTGGAAAACAATGAAGAGGAGGTTAAGGAGTCTATAGATGAATATGAAAAAGATGAACACTTAGATTTGGAGGATAATTATCCTGAGTATGAAGCAGAGGAGTATGGTAGTGTTGACTATGATGAGAAGGAAATTGAACAAGATGAAGTTCAGGAGGAGGGAGATGAAGTAGAGGAAGATCCTGAAGAGATTGTGGGTGAAGAAGAGGGTGATACAAGTGATGAAGATGTTGAATATGTTTATGAAGAAGTTGAGGATGATGATGATGAGCATGCTGGTGAGGAGCATGAGCATGATGAGCATGCACAGATGCCTGATGTGGAGGAAGAGGAACACCGTGAAGTGGTAAAGGAGAGGCAAAAGCGGAAGGAATTTGAAGTATTTGTTGGTGGCCTAGATAAGGATGCTACTGAGCATGATCTGAAGAAGGTTTTCAGTAAAGTTGGGGTAGTTACTGAAGTCCGGCTGATGATAAATCCCCAGACTAAAAGGAACAAGGGATTTGCATTCTTGCGTTTTGAAACGGTTGAGCAAGCGAAAAGAGCTGTGGTGGAGCTAAAAAATCCAGTGATTAATGGCAAACAATGTGGTGTTACTCCAAGTCAGGACAGTGATACTCTCTACTTAGGTAACATATGCAAGACGTGGAAAAAGGAAGCTTTAAAGGACAAACTGAAACATTATGGAGTAGAAAATGTGGAGGATTTGACTTTAGTAGAAGATGATACCAATGAGGGAATGAACCGAGGATTTGCATTTTTGGAGTTTTCATCTCGTTCAGATGCTAAGGAAGCCTATAGGCGACTGCAGAAGAGAGATGTTGTGTTTGGAGTTGATAAGCCTGCAAAGGTTTCCTTTGCTGACTCCTTTATTGATCTGGGTGATGAAATTATGGCACAGGTTAAAACTGTATTTATTGATTCACTGCCTCCTTCATGGGATGAAGATTATGTCCGGAATCTTCTTAAGAAATATGGAGAGATTGAAAAAATTGAGCTTGCTAGGGACATGCCAGCTGCTCGGAGGAAGAATTATGGATTTGTTACATTTAGTACACATGCTGCTGCTGTGGAATGTGCTGATAGCATTACTAGTGCAGGGTTAGGTGAAGGTGACAAAAAGGCAAAAGTTAGGGCTAGATTGTCACGGCCTCTTTCAAAACCTCTTCAGAGAGGCCGTGGAAAACATGTTAATCATGGGGACTTCCGTTCTGGTCGCAATTCTGGAAGATTGGTAAGGTCTTCATGGAGTCGACCTCCACCACGTAGTCTTCCTGCCCGTGTGGTGAGAGGAGTTGGAAGTCGTGTTCCGCCAGTTAGACCTATTAGTGTGAGAAGTAGACGTCCTGTCACATCCATGCTAGAAAGAGCCAGGCCAGTGGCTCCTCCAGCTAGAAGCTCTGACAGGAGATTGACTGCTCCTGCATATAAAAAAAGTGGCATGAAAAGAGATTATAGTCGACGTGAGGATCTACCACCTCCGAGAAGTAGAGTTGCTGCAGATTATGGTTCTAGGGTAGCCTCTCAGAGGCACACATCTTATAGGGATTATCCTGCCCGTGGCTCTGACTACCCTGAGCTGCATAGAAGTACATCTCGTGCTGCACCAAAGAGAGGTTATGTTGATGATGGCTATGGCCAAAGATTTGAGAGGCCTCCTCCTCCTCCTCCTCCCCATCTAAGTTACCGTGAAGGACGGCCACGTGATTATGACACTCTATCTGGCTCAAAACGTCCTTATACTGCTATAGATGATGTTCCTCCTCGGTATGATACTGGTGCTCGCCAATCAAGATCTCGTTTAGATTATGACTATGGAGATAGTGCTTCACAGTATGGAGATGCTTATGGTGACAGACTTGGAAGATCTAGTCTTGGATATAGTGGCAGCAGAAATTCTATTTCTAGTCAAGACTTACATGGGACATATGGCAGTCGACAAGGCATGAGTTATGGCGGAGGTTCTTATGGTGGTAGTGATGGTGGTATGTACTCATCAAGTTATGGTGGTGATTATGTATCCCGTGGAAGTGATGTTGGTGGCCGTTCATATGCATCTATGTATTCTGGTAGAGGTGCGGGTGGTAGCAGCAGTTATATGGGTAGTGGCGGATCTCGGTCTTATTATTGA 2340 0.4457 MPPRIVKRGAAAKRTSRGSSKAAPENQHEPETAEVVVKNNEENSVVDAGVEEKPVYVEQEHEEVPNGSAKVENNEEEVKESIDEYEKDEHLDLEDNYPEYEAEEYGSVDYDEKEIEQDEVQEEGDEVEEDPEEIVGEEEGDTSDEDVEYVYEEVEDDDDEHAGEEHEHDEHAQMPDVEEEEHREVVKERQKRKEFEVFVGGLDKDATEHDLKKVFSKVGVVTEVRLMINPQTKRNKGFAFLRFETVEQAKRAVVELKNPVINGKQCGVTPSQDSDTLYLGNICKTWKKEALKDKLKHYGVENVEDLTLVEDDTNEGMNRGFAFLEFSSRSDAKEAYRRLQKRDVVFGVDKPAKVSFADSFIDLGDEIMAQVKTVFIDSLPPSWDEDYVRNLLKKYGEIEKIELARDMPAARRKNYGFVTFSTHAAAVECADSITSAGLGEGDKKAKVRARLSRPLSKPLQRGRGKHVNHGDFRSGRNSGRLVRSSWSRPPPRSLPARVVRGVGSRVPPVRPISVRSRRPVTSMLERARPVAPPARSSDRRLTAPAYKKSGMKRDYSRREDLPPPRSRVAADYGSRVASQRHTSYRDYPARGSDYPELHRSTSRAAPKRGYVDDGYGQRFERPPPPPPPHLSYREGRPRDYDTLSGSKRPYTAIDDVPPRYDTGARQSRSRLDYDYGDSASQYGDAYGDRLGRSSLGYSGSRNSISSQDLHGTYGSRQGMSYGGGSYGGSDGGMYSSSYGGDYVSRGSDVGGRSYASMYSGRGAGGSSSYMGSGGSRSYY 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00090 779 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 275 359 IPR000504 GO:0003723
Pumo5g00090 779 Gene3D - 362 484 IPR012677 -
Pumo5g00090 779 MobiDBLite consensus disorder prediction 541 565 - -
Pumo5g00090 779 FunFam RNA recognition water-stress protein1 362 487 - -
Pumo5g00090 779 SMART rrm1_1 196 269 IPR000504 GO:0003723
Pumo5g00090 779 SMART rrm1_1 276 355 IPR000504 GO:0003723
Pumo5g00090 779 SMART rrm1_1 373 448 IPR000504 GO:0003723
Pumo5g00090 779 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 372 454 IPR000504 GO:0003723
Pumo5g00090 779 Gene3D - 137 270 IPR012677 -
Pumo5g00090 779 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 195 273 IPR000504 GO:0003723
Pumo5g00090 779 MobiDBLite consensus disorder prediction 509 677 - -
Pumo5g00090 779 Gene3D - 275 358 IPR012677 -
Pumo5g00090 779 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 126 275 - -
Pumo5g00090 779 SUPERFAMILY RNA-binding domain, RBD 274 431 IPR035979 GO:0003676
Pumo5g00090 779 Coils Coil 68 91 - -
Pumo5g00090 779 MobiDBLite consensus disorder prediction 45 77 - -
Pumo5g00090 779 MobiDBLite consensus disorder prediction 95 163 - -
Pumo5g00090 779 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 197 265 IPR000504 GO:0003723
Pumo5g00090 779 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 374 431 IPR000504 GO:0003723
Pumo5g00090 779 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 277 343 IPR000504 GO:0003723
Pumo5g00090 779 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 24 735 - -
Pumo5g00090 779 CDD RRM_SF 277 344 - -
Pumo5g00090 779 MobiDBLite consensus disorder prediction 591 606 - -
Pumo5g00090 779 MobiDBLite consensus disorder prediction 457 497 - -
Pumo5g00090 779 Coils Coil 110 130 - -
Pumo5g00090 779 MobiDBLite consensus disorder prediction 754 779 - -
Pumo5g00090 779 FunFam Heterogeneous nuclear ribonucleoprotein Q 276 358 - -
Pumo5g00090 779 MobiDBLite consensus disorder prediction 1 188 - -
Pumo5g00090 779 MobiDBLite consensus disorder prediction 760 779 - -
Pumo5g00090 779 MobiDBLite consensus disorder prediction 164 188 - -
Pumo5g00090 779 SUPERFAMILY RNA-binding domain, RBD 190 273 IPR035979 GO:0003676
Pumo5g00090 779 CDD RRM_SF 374 429 - -
Pumo5g00090 779 CDD RRM_SF 197 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00090 Pumo-Chr5 3676472 3682835 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00090 197 433 Eukaryotic Initiation Factors Gene Family AT4G34110 23.293 1.66e-13 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00090 - - gmx:100811387 1145.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g01978 7 53110330 53116336 Pumo5g00090 5 3676472 3682835 PCT