Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00080 ATGGAAGGAGAGAGAGGTGGTGCTCCCAACTATGAGCTTCAAGTTTCCTTCACCAACACCCAACAAGCCATACACGAAATGGGTTTTGTTCAATATGAAGAAAACCAGGTCCTTGGCTTCTTGTCACCACCCACTTCACAATCTCAGTCTTCTCACCTCTCTCAATCCTTAAACAGTGACACTGTCGTCGCTGCCACCACCACGACGGCGGCCGCAACCATCGGATTCATGAGTCATAGCGAACTTGTCACCAAAACTTGGAATAACGACCAGCAGGTAGGAACTCTGGATCCAAAGCCTGTCGAAGAAGAAAATTGCACTGGAAATGGTAGTGATCAAGGCAATAACAACGCTTGGTGGAGGAGCGCAGCTACAGAGAAGAGCAAGGTGAAAATAAGGAGGAAGCTTAGAGAACCAAGGTTTTGTTTCCAAACAAGAAGTGATGTAGATGTGCTTGATGATGGCTACAAATGGAGGAAATATGGTCAGAAAGTTGTAAAGAATAGTCTTCATCCAAGAAGTTATTACCGCTGCACCCACAACAACTGTAGGGTGAAGAAGAGGGTTGAACGACTCTCAGAGGATTGTCGTATGGTGATAACCACCTATGAAGGTAGACACAACCACTCCCCTTGCGACGACTCAAATTCATCCGAGCATGAATGCTTCACCTCTTTCTAG 681 0.4611 MEGERGGAPNYELQVSFTNTQQAIHEMGFVQYEENQVLGFLSPPTSQSQSSHLSQSLNSDTVVAATTTTAAATIGFMSHSELVTKTWNNDQQVGTLDPKPVEEENCTGNGSDQGNNNAWWRSAATEKSKVKIRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNSSEHECFTSF 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00080 226 Gene3D WRKY domain 138 212 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo5g00080 226 FunFam WRKY transcription factor 57 138 212 - -
Pumo5g00080 226 SUPERFAMILY WRKY DNA-binding domain 144 210 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo5g00080 226 ProSiteProfiles WRKY domain profile. 147 209 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo5g00080 226 Pfam WRKY DNA -binding domain 153 209 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo5g00080 226 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 58 213 IPR044810 GO:0003700
Pumo5g00080 226 SMART WRKY_cls 152 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00080 Pumo-Chr5 3563484 3572227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00080 3 226 WRKY Transcription Factor Family AT2G44745 57.391 1.28e-75 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo5g00080 WRKY 1.6e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00080 - - gmx:100526878 411.379