Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00078 ATGGGTCGCTCCATTTTTTACCTTCACCTTCCTGTTTCGTCTTTTCTTATTTTCACTTTGTTGCTGAATGCTGTCTATGCCAGTAAAAAGTGCTACATTGTATACTTGGGAGCACATTCTCACGGTCCAACCCCTTCATCTGTTGACCTTGAAACCGCCACACATTCTCATTATGATTTACTGGGTTCAATCTTGGGAAGCCATGAAAAGGCCAAAGAGGCAATTATTTATTCATATAATAAACACATCAATGGCTTTGCAGCTGCACTAGAAGAGGAAGAAGCAGCAGACATTGCAAAAAACCCAAAAGTAGTATCTGTGTTCTTGAGCAAAGAGCATAAACTGCACACTACTCGTTCATGGGAGTTTCTTGGACTGCAAAGAAATGGTAGAAACACAGCATGGCAAAAGGGAAGATTTGGTGAAAATACAATCATCGGTAACATTGATACAGGTGTTTGGCCGGAGTCCAAGAGTTTTACCGACAACGGAATAGGTCCTGTCCCCTCAAAATGGCGTGGGGGCAATGTCTGTCAAATTAACAAACTCCGTGGTTCAAAGAAAGTTCCATGTAACAGGAAGCTAATTGCAGCAAGGTTCTTCAACAAAGCTTATGAAGCATTCAACGGTCAACTTCCCCCATCACAGCAAACAGCACGTGACTTTGTAGGCCATGGTACTCATACTCTATCAACTGCTGGAGGCAACTTTGTTCCAGGTGCAAGTGTATTTGGCAATGGCAATGGCACTGCAAAGGGTGGATCCCCAAGAGCTCGAGTTGCAGCATACAAAGCGTGTTGGTCTCTAACCGATGCAGCCAGTTGTTTTGGCGCGGATGTGTTAGCTGCTATTGACCAAGCCATAAGTGATGATGTTGATGTTATTTCGGTTTCTGTTGGAGGCCGAACTAGTCTTGGTGCTGAAGAAATATTCACTGATGAGGTTTCCATTGGGGCATTCCATGCACTTGCCAAAAATATTCTAGTGGTTGCCTCTGCAGGGAACGATGGACCAACACCTGGAAGTGTTATCAATGTGGCTCCTTGGCTATTCACTATTGCAGCTAGCACACTAGACAGGGACTTCAGCAGTACCTTAACTTTTGGAAAAAATCAGCAAATTACGGCTGGGACACTTGACCCTAGAAAAGTAAACGGCAAAATAGTGCAATGCCTTCGAGAAGGAAAAATAAAATCAGTTGCTGAGGGTCAGGAAGCTCTATCTGCAGGCGCCAAGGGAGTGATTTTGGGCAATCAAGAGCAAAATGGGGACACGCTTCTTGCCGAGCCTCATGTTTTGTCCACTGTCAACTATCATCAACAACATCAAAAAACAACGCCCGCTAGTTTTGACATAACTGCCACTGTTACGTCCATTATATGCACACACGTTATATATGCATGTTTATGTTGCAGGGACGATCCAATAAACTCAAATGCGACACTAAGGATGTCTCCAGCAAGAACATTGCTTGGAAGAAAGCCAGCTCCAGTTATGGCTTCATTCTCATCTAGAGGACCCAATCCAATTCAGCCATCAATACTCAAGCCTGATGTAAGTGCGCCTGGTGTGAACATACTTGCTGCCTATTCACTATTCGCAAGTGCATCAAACTTGCTAACAGACACTCGTCGTGGGTTTAAATTCAATGTATTGCAAGGAACTTCAATGTCATGCCCTCATGTTGCTGGCATTGCTGGACTTATCAAAACACTTCATCCAGATTGGAGTCCAGCAGCTATTAAATCAGCAATCATGACCACAGGTATTTCTATATATGCATATACTTTGTCCAATAACCAACGTGTGATTCGTTGGCATGAGTAG 1827 0.4368 MGRSIFYLHLPVSSFLIFTLLLNAVYASKKCYIVYLGAHSHGPTPSSVDLETATHSHYDLLGSILGSHEKAKEAIIYSYNKHINGFAAALEEEEAADIAKNPKVVSVFLSKEHKLHTTRSWEFLGLQRNGRNTAWQKGRFGENTIIGNIDTGVWPESKSFTDNGIGPVPSKWRGGNVCQINKLRGSKKVPCNRKLIAARFFNKAYEAFNGQLPPSQQTARDFVGHGTHTLSTAGGNFVPGASVFGNGNGTAKGGSPRARVAAYKACWSLTDAASCFGADVLAAIDQAISDDVDVISVSVGGRTSLGAEEIFTDEVSIGAFHALAKNILVVASAGNDGPTPGSVINVAPWLFTIAASTLDRDFSSTLTFGKNQQITAGTLDPRKVNGKIVQCLREGKIKSVAEGQEALSAGAKGVILGNQEQNGDTLLAEPHVLSTVNYHQQHQKTTPASFDITATVTSIICTHVIYACLCCRDDPINSNATLRMSPARTLLGRKPAPVMASFSSRGPNPIQPSILKPDVSAPGVNILAAYSLFASASNLLTDTRRGFKFNVLQGTSMSCPHVAGIAGLIKTLHPDWSPAAIKSAIMTTGISIYAYTLSNNQRVIRWHE 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00078 608 Pfam Subtilase family 141 589 IPR000209 GO:0006508|GO:0008236
Pumo5g00078 608 SUPERFAMILY Subtilisin-like 115 593 IPR036852 GO:0004252|GO:0006508
Pumo5g00078 608 ProSitePatterns Serine proteases, subtilase family, serine active site. 554 564 IPR023828 -
Pumo5g00078 608 Gene3D Peptidase S8/S53 domain 144 358 IPR036852 GO:0004252|GO:0006508
Pumo5g00078 608 Gene3D Peptidase S8/S53 domain 492 590 IPR036852 GO:0004252|GO:0006508
Pumo5g00078 608 ProSiteProfiles Serine proteases, subtilase domain profile. 120 608 - -
Pumo5g00078 608 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 32 600 IPR045051 -
Pumo5g00078 608 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 21 116 IPR037045 -
Pumo5g00078 608 Gene3D - 359 374 - -
Pumo5g00078 608 Gene3D - 375 491 - -
Pumo5g00078 608 FunFam Subtilisin-like protease SBT5.3 21 116 - -
Pumo5g00078 608 CDD PA_subtilisin_like 375 436 - -
Pumo5g00078 608 PRINTS Subtilisin serine protease family (S8) signature 553 569 IPR015500 -
Pumo5g00078 608 PRINTS Subtilisin serine protease family (S8) signature 221 234 IPR015500 -
Pumo5g00078 608 PRINTS Subtilisin serine protease family (S8) signature 141 160 IPR015500 -
Pumo5g00078 608 CDD Peptidases_S8_3 113 588 IPR034197 -
Pumo5g00078 608 Pfam Peptidase inhibitor I9 32 116 IPR010259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00078 Pumo-Chr5 3455914 3461062 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00078 32 588 Subtilisin-like Serine Gene Family AT2G04160 49.414 0.0 543