Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00066 ATGGCTTCAGCCACCGTAGATTCCGATTTTGCATTCTTGGAATCTGTTCAACAATACCTACTTGGACATGATTCCATCAATCTCATGCCTCAAACCCACCAGGTTGCATCTCATGATCCATTTTCAAACCCCAAATCTGATGGTGATTCGGAGAACACTGTTTTCCGCAGTGAGGATGCAACAGCTGTGGTGGCGCGTGATATTAACGCGCCACCAACATGGAAGCATTACAGAGGGGTAAGACGTAGGCCGTGGGGGAAGTTCGCGGCTGAGATTAGGGATCCAAAGAAGAATGGAGCTAGGGTTTGGCTTGGGACTTATGATACTGAAGAGAAAGCAGCTTTGGCATATGACAAAGCCGCTTTCAAAATGCGTGGCCAAAAGGCCAAGCTGAATTTTCCTCACCTTATCGACTCTGACAATTCAGATGTATTGTCGGAGCCAGTTATGGTGACAACTTCCAAGCGAAGTTTGTCAAAAATTTCTCTGCCATTGTCACCGTCGTCGTCGTCGTCGTCATGTTCAGATGATAGCTCAGAGTCACAAGGGACAAAGAGGAGGAAGAGCCTGGCTGATCTACTGAATAAATTAGCCAAGAATAGAAGCCAAGTCAAGGTGGAAAGTTGGAGTGGCTAG 636 0.4686 MASATVDSDFAFLESVQQYLLGHDSINLMPQTHQVASHDPFSNPKSDGDSENTVFRSEDATAVVARDINAPPTWKHYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTEEKAALAYDKAAFKMRGQKAKLNFPHLIDSDNSDVLSEPVMVTTSKRSLSKISLPLSPSSSSSSCSDDSSESQGTKRRKSLADLLNKLAKNRSQVKVESWSG 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00066 211 ProSiteProfiles AP2/ERF domain profile. 76 134 IPR001471 GO:0003700|GO:0006355
Pumo5g00066 211 Pfam AP2 domain 76 126 IPR001471 GO:0003700|GO:0006355
Pumo5g00066 211 MobiDBLite consensus disorder prediction 155 179 - -
Pumo5g00066 211 CDD AP2 75 136 IPR001471 GO:0003700|GO:0006355
Pumo5g00066 211 FunFam Ethylene-responsive transcription factor 2 75 135 - -
Pumo5g00066 211 MobiDBLite consensus disorder prediction 155 190 - -
Pumo5g00066 211 PANTHER DNA-BINDING DOMAIN 53 188 IPR044808 GO:0003700|GO:0009873
Pumo5g00066 211 Gene3D AP2/ERF domain 75 135 IPR036955 GO:0003700|GO:0006355
Pumo5g00066 211 SMART rav1_2 76 140 IPR001471 GO:0003700|GO:0006355
Pumo5g00066 211 PRINTS Ethylene responsive element binding protein signature 77 88 IPR001471 GO:0003700|GO:0006355
Pumo5g00066 211 PRINTS Ethylene responsive element binding protein signature 116 136 IPR001471 GO:0003700|GO:0006355
Pumo5g00066 211 SUPERFAMILY DNA-binding domain 76 135 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00066 Pumo-Chr5 2696920 2698055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00066 76 157 AP2-EREBP Transcription Factor Family AT2G44840 71.951 6.27e-37 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo5g00066 AP2 3.1e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00066 K09286 - gmx:548037 333.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g01920 7 50746733 50748339 Pumo5g00066 5 2696920 2698055 PCT