Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00057 ATGAATCGTAGAGTGAGGAGGAAGGTGGCAAGGAAAAGCAAAGGGAATGTGGTGCAGTCTAGTTTCCCTGAAGTTCAAGATGATGTTTTGGATTTGGAACAGCAAGGGCAAGGAGTTGTTGATTGGAAGTGCTTGCCTGATGATACAGTAATTCAGCTGTTGTCGTGTCTGAGTTATCGAGATCGAGCTAGCTTGTCGTCAACTTGTAAGACATGGCGGTCTCTTGGTAGCTCCCCGTGTTTGTGGACTTCTCTGGATCTTCGTTCACACAGGTTTGATGCTGGCATGGCTTCATCACTTGCTCCACTTGCTCCCAGGTGTGTGCATCTCCAGAAGCTCAGGTTTCGCGGTGCGGAGTCTGCTGATGCAATAATTCATCTTCGAGCTAGGAACTTGCGTGAATTGAGTGGTGACTATTGCAGGAAGATTACTGATGCAACTCTTTCGGTGATTGTGGCTCGGCATGAGTTACTTGAGAGCCTTCAGCTTGGACCGGATTTCTGTGAGAGAATAAGTAGTGATGCTATTAAAGCAATAGCTCATTGCTGCCCTAAATTGAATAAACTTAGACTCTCTGGCATTAGAGACGTAAATGCTGATGCTATTAATGCCTTGGCTAAGCATTGTCCAAAGTTGACTGATATTGGGTTCATTGATTGTCTGAATGTTGACGAGGTTGCGCTGGGAAATGTGCTATCAGTTCGTTTCCTTTCTGTTGCAGGGACAACAAGTATGAAGTGGGGTGTGGTTTCCCATCTTTGGCATAAACTTCCTAACCTGATTGGATTAGATGTTTCAAGAACTGATATTGGTCCATCCGCTGTTTTCAGAATGTTATCCTTATCACAGAATTTAAGGGTTTTGATTGCTCTGAATTGTCCTATCCTTGAAGAAGACACTAGCTTCTCTGCTAGCAAATATAAAAACAAGTTATTAATTTCCCTTCGTACTGATATTTTTAAAGGACTGTCTTCTTTATTTTTTGATAATACAAAGAGAGGAAAGAATGTATTTTTGGACTGGAGGACCTCAAAGAATAATGATAAGGACCTTAATGAAATTATACCCTGGCTTGAGTGGATGCTATCCCATACACTTTTGCGCTCTGCTGAGAGTCCCCAACAGGGTCTTGATAGTTTCTGGGTTGAACAAGGTGGAGCGCTTTTGCTTAGTCTAATGCAGAGTTCTCAAGAGGATGTTCAAGAGAGGGCAGCCACAGGTCTTGCAACTTTTGTTGTAATTGATGATGAAAATGCTAGCATAGATTGTGGAAGGGCTGAAGCAGTTATGCGAGATGGAGGCATACGCCTCCTACTTGGCCTCGCAAAATCTTGGAGGGAAGGGCTTCAATCTGAGGCAGCTAAGGCCATTGCAAATTTGTCCGTCAATGCCAATGTGGCCAAAGCTGTTGCAGAAGAGGGTGGGATTGAGATTCTCGCTGGTTTGGCTAGGTCAATGAACAAGCTGGTGGCTGAAGAGGCTGCTGGAGGATTATGGAATCTCTCCGTTGGAGAAGAGCACAAGGGTGCCATTGCTGAAGCTGGTGGAATACAAGCTTTAGTGGATCTTATATTCAAGTGGTCCTCTAGTGGAGATGGAGTTTTAGAACGTGCGGCTGGTGCATTGGCTAATTTGGCAGCTGATGACAAGTGTAGTACAGAGGTTGCACTGGCAGGAGGTGTACATGCTCTGGTGATGCTTGCTCGTAACTGCAAATTTGAGGGAGTGCAAGAGCAGGCTTCTCGTGCATTGGCTAACTTAGCTGCCCATGGAGATAGTAACAGTAACAATGCCGCTGTTGGACAAGAAGCAGGTGCTCTTGAGGCTCTTGTTCAACTTACCCGTTCTCCCCACGAGGGTGTTAGGCAAGAGGCTGCTGGTGCACTTTGGAATTTGTCATTTGACGATAGAAATCGAGAGGCCATTGCTGCAGCTGGTGGAGTTCAGGCCTTGGTTGCTCTTGCCCAAGCTTGTGCTAATGCCTCCCCTGGACTTCAAGAGAGAGCTGCTGGTGCTCTGTGGGGATTGTCAGTCTCGGAAACTAATAGTGTTGCCATTGGACGAGAAGGAGGTGTTGCACCTCTGATTGCACTGGCACGGTCTGAAGCAGAGGATGTTCATGAAACTGCTGCAGGAGCACTATGGAATCTTGCTTTCAATGCTAGTAACGCTCTAAGAATAGTAGAGGAAGGTGGAGTATCTGCACTTGTTGATCTCTGTTCTTCATCAGTATCAAAAATGGCGAGATTCATGGCTGCGTTGGCATTGGCTTACATGTTTGACGGGAGAATGGATGAATATGCTTTAGTAGGCACTCCATCTGAAAGTAGTTCTAATTCTAAGAGTGTGAGCTTGGATGGAGCTAGAAGGATGGCTTTGAAACACATTGAAGCTTTTGTCCTTATGTTCTCTGATCCACAAGCATTTGCAGGCTGCTGCTGCATCATCTGCTCCGGCAGCATTAGCACAGGTTACTGA 2478 0.4564 MNRRVRRKVARKSKGNVVQSSFPEVQDDVLDLEQQGQGVVDWKCLPDDTVIQLLSCLSYRDRASLSSTCKTWRSLGSSPCLWTSLDLRSHRFDAGMASSLAPLAPRCVHLQKLRFRGAESADAIIHLRARNLRELSGDYCRKITDATLSVIVARHELLESLQLGPDFCERISSDAIKAIAHCCPKLNKLRLSGIRDVNADAINALAKHCPKLTDIGFIDCLNVDEVALGNVLSVRFLSVAGTTSMKWGVVSHLWHKLPNLIGLDVSRTDIGPSAVFRMLSLSQNLRVLIALNCPILEEDTSFSASKYKNKLLISLRTDIFKGLSSLFFDNTKRGKNVFLDWRTSKNNDKDLNEIIPWLEWMLSHTLLRSAESPQQGLDSFWVEQGGALLLSLMQSSQEDVQERAATGLATFVVIDDENASIDCGRAEAVMRDGGIRLLLGLAKSWREGLQSEAAKAIANLSVNANVAKAVAEEGGIEILAGLARSMNKLVAEEAAGGLWNLSVGEEHKGAIAEAGGIQALVDLIFKWSSSGDGVLERAAGALANLAADDKCSTEVALAGGVHALVMLARNCKFEGVQEQASRALANLAAHGDSNSNNAAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVQALVALAQACANASPGLQERAAGALWGLSVSETNSVAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNASNALRIVEEGGVSALVDLCSSSVSKMARFMAALALAYMFDGRMDEYALVGTPSESSSNSKSVSLDGARRMALKHIEAFVLMFSDPQAFAGCCCIICSGSISTGY 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00057 825 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 690 732 IPR000225 GO:0005515
Pumo5g00057 825 ProSiteProfiles F-box domain profile. 39 85 IPR001810 GO:0005515
Pumo5g00057 825 FunFam Protein ARABIDILLO 2 360 507 - -
Pumo5g00057 825 Gene3D - 485 789 IPR011989 -
Pumo5g00057 825 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 474 516 IPR000225 GO:0005515
Pumo5g00057 825 Pfam Armadillo/beta-catenin-like repeat 468 502 IPR000225 GO:0005515
Pumo5g00057 825 Pfam Armadillo/beta-catenin-like repeat 558 589 IPR000225 GO:0005515
Pumo5g00057 825 Pfam Armadillo/beta-catenin-like repeat 427 461 IPR000225 GO:0005515
Pumo5g00057 825 Pfam Armadillo/beta-catenin-like repeat 505 547 IPR000225 GO:0005515
Pumo5g00057 825 Pfam Armadillo/beta-catenin-like repeat 635 677 IPR000225 GO:0005515
Pumo5g00057 825 Pfam Armadillo/beta-catenin-like repeat 682 718 IPR000225 GO:0005515
Pumo5g00057 825 Pfam Armadillo/beta-catenin-like repeat 597 633 IPR000225 GO:0005515
Pumo5g00057 825 Gene3D Ribonuclease Inhibitor 35 318 IPR032675 -
Pumo5g00057 825 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 433 475 IPR000225 GO:0005515
Pumo5g00057 825 SMART fbox_2 45 85 IPR001810 GO:0005515
Pumo5g00057 825 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 605 647 IPR000225 GO:0005515
Pumo5g00057 825 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 646 691 IPR000225 GO:0005515
Pumo5g00057 825 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 515 560 IPR000225 GO:0005515
Pumo5g00057 825 PANTHER PROTEIN ARABIDILLO 1 1 810 - -
Pumo5g00057 825 Gene3D - 364 484 IPR011989 -
Pumo5g00057 825 SUPERFAMILY ARM repeat 382 749 IPR016024 -
Pumo5g00057 825 SMART LRR_CC_2 129 154 IPR006553 -
Pumo5g00057 825 SMART LRR_CC_2 209 234 IPR006553 -
Pumo5g00057 825 SMART LRR_CC_2 183 208 IPR006553 -
Pumo5g00057 825 Pfam F-box-like 43 88 IPR001810 GO:0005515
Pumo5g00057 825 SUPERFAMILY RNI-like 52 298 - -
Pumo5g00057 825 SMART arm_5 504 547 IPR000225 GO:0005515
Pumo5g00057 825 SMART arm_5 679 719 IPR000225 GO:0005515
Pumo5g00057 825 SMART arm_5 548 589 IPR000225 GO:0005515
Pumo5g00057 825 SMART arm_5 635 678 IPR000225 GO:0005515
Pumo5g00057 825 SMART arm_5 463 503 IPR000225 GO:0005515
Pumo5g00057 825 SMART arm_5 594 634 IPR000225 GO:0005515
Pumo5g00057 825 SMART arm_5 720 761 IPR000225 GO:0005515
Pumo5g00057 825 SMART arm_5 422 462 IPR000225 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00057 576 763 U-box Gene Family AT2G23140 35.450 2.22e-20 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00057 - - gmx:100819086 1474.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00057 5 2600228 2618606 Pumo5g00057 5 2600228 2618606 ECH