Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00051 ATGGATGAGAAAGATGATGATTTTGGGTTGAGTTTGAGTTTGAGTTTGGGAGTGAATCAACAACAACCTCCTCCTTTGAATCACATGCACCAGCCTCAACAACAACCTGTTCCCATGAATCACAATAAGACTCTCTTTGGTGATTTGTTTCAGTTACCAGATCGGAGCTCCGATATGGTACGAGGAATCGACGTCAATTCGGCGGCGGAGTGCGACGAAGACAACGGCGTTTCGTCGCCGAACAGCGCTGTCTCGAGCGTGAGCGGCGGTGGCAAGCGAGGCGAGAGGGACGACGATAATGCCGCGGCCGTGGCCGGTGAGAGGACCTCGTGCTCACGAGGGAGCGACGACGATGATGGCGGCGGCGGCGACGGCGATGCCGGGAGGAAGAAGCTGAGGCTGACGAAAGAACAGTCCATGGTGTTGGAAGAAACGTTCAAGGAGCACAACACGCTGAATCCGAAACGGAAGCAAGCGTTGGCGGAGGAGTTGAATCTGAAGCCAAGACAAGTAGAGGTGTGGTTTCAGAACAGAAGAGCAAGGACCAAGTTGAAGCAAACTGAAGTGGATTGTGAATACTTGAAGAGATGCTGTGAGAATTTAACTGAAGAGAATAGAAGGTTGCACAAGGAGGTCCAAGAGCTTAGGGCATTGAAATTATCCCCACAAATGTACATGCACATGAACCCTCCCACCACTCTTACAATGTGCCCTTCTTGTGAGCGTGTTCACTCCTCTGCATCCTCCTCCCCTGCCACCATCCACTCGGCAGCGGTGGCCACGCCGAGTAATCGCAAACTGTTCGGCGCAAACATCCGGCGGCCAGTGCCGGTCAACACTTGGCCATTTGAAGGCCCAATTCCTCGGCCCTAA 873 0.5304 MDEKDDDFGLSLSLSLGVNQQQPPPLNHMHQPQQQPVPMNHNKTLFGDLFQLPDRSSDMVRGIDVNSAAECDEDNGVSSPNSAVSSVSGGGKRGERDDDNAAAVAGERTSCSRGSDDDDGGGGDGDAGRKKLRLTKEQSMVLEETFKEHNTLNPKRKQALAEELNLKPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLHKEVQELRALKLSPQMYMHMNPPTTLTMCPSCERVHSSASSSPATIHSAAVATPSNRKLFGANIRRPVPVNTWPFEGPIPRP 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00051 290 Pfam Homeodomain 129 183 IPR001356 GO:0003677
Pumo5g00051 290 Pfam Homeobox associated leucine zipper 185 219 IPR003106 GO:0006355|GO:0043565
Pumo5g00051 290 MobiDBLite consensus disorder prediction 111 131 - -
Pumo5g00051 290 Coils Coil 198 218 - -
Pumo5g00051 290 ProSitePatterns 'Homeobox' domain signature. 160 183 IPR017970 GO:0000981|GO:0006355
Pumo5g00051 290 MobiDBLite consensus disorder prediction 13 41 - -
Pumo5g00051 290 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 10 258 - -
Pumo5g00051 290 MobiDBLite consensus disorder prediction 1 44 - -
Pumo5g00051 290 MobiDBLite consensus disorder prediction 61 131 - -
Pumo5g00051 290 FunFam Homeobox-leucine zipper protein 18 114 190 - -
Pumo5g00051 290 ProSiteProfiles 'Homeobox' domain profile. 125 185 IPR001356 GO:0003677
Pumo5g00051 290 SUPERFAMILY Homeodomain-like 114 186 IPR009057 -
Pumo5g00051 290 CDD homeodomain 129 186 IPR001356 GO:0003677
Pumo5g00051 290 SMART halz 185 228 IPR003106 GO:0006355|GO:0043565
Pumo5g00051 290 Pfam HD-ZIP protein N terminus 1 97 IPR006712 GO:0005634
Pumo5g00051 290 Gene3D - 133 183 - -
Pumo5g00051 290 SMART HOX_1 127 189 IPR001356 GO:0003677
Pumo5g00051 290 MobiDBLite consensus disorder prediction 72 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00051 Pumo-Chr5 2564899 2568299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00051 1 242 Homeobox Transcription Factor Family AT3G60390 59.498 4.15e-90 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pumo5g00051 HD-ZIP_N 9.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00051 K09338 - gmx:100819624 465.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00051 5 2564899 2568299 Pumo5g00051 5 2564899 2568299 ECH
Pumo7g01902 7 50439080 50442707 Pumo5g00051 5 2564899 2568299 PCT