Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00046 ATGGTTCCTCTGTTTCCGCAAAATTTCTGTCATGTGAACCTCTCCTTCAATGACTTGAAGGGTCCCATTCCATATGGTTGGTTTGAGAATCAGCTAATAGGGAACAAAGTTGTATGTAGTGACAATCCGTTTTACCAAGCCAAATTCCAATTCCAACCTTGTCCAGCCCAAGACAACAAAGTAATGCACAATCTGGTTATAGTTCTTCCCATTATCCTTTTTCTAATTATGGTCTTATTACTACTTTTGTATCTGAGGCATATTCGCATTGCAATTAAGAATAAACATGCAAAGACAATGATGTCCACTGAGAATGGGGACTTGTTCTGTATATGGAACTATGATGGAAGCATAGCCTACGAAGACATCATTACAGCAACAGAAGACTTTGACATGAAATATTGTATTGGAACAGGTGCCTATGGGAGTGTTTATAAGGCACAATTACCAAGTGGCAAGATTGTTGCTGTGAAAAAACTCCATAGCTTTGAAGCAGAGGTGCTGGCATTTGATGAGAGTTTCAGAAACGAGGTCAAAGTATTATCAGAAATAAAGCATCGACATATCGTGAAGCTCCATGGATTCTGCTTGCACAGAAGAATCATGTTTTTGATCTATGAGTACATGGAGAAAGGAAGCTTGTTTTCTGTCTTGTTTGACGATGTGGAAGCGATGGAATTGGATTGGAGAAAGAGGGTTAACAATGTGAAAGGCACTGCACATGCTCTGTCATATCTTCATCATGACTGCATCCCTCCAATAGTGCATAGAGACATATCAGCCAGCAATGTCTTGCTTAACTCAGACTGGGAGCCAACTGTTTCAGACTTTGGCACAGCCCGATTCCTCAGCCTTGATTCATCCAATCGAACTATAGTTGCTGGAACCATTGGGTACATAGCCTCAGAGCTTGCATATACTATGGTTGTGAGTGAAAAGTGTGACGTGTATAGCTTTGGAGTGGTGGCACTTGAAACTTTGATGGGATTGCATCCTAAGGAAATACTGTCTTCACTTCAATCTGCTTCTACTTCTACTGATAATGGCATCACATTATGTGAAATATTGGACCAACGCCTCCCACAGCCAACACTGTCAGTTTTACTGGACATAGTTCGTGTTGCCACAGTGGCATTTGCGTGCTTAAATCCCAATCCTTGCTCTCGCCCAACAATGAAATACGTCTCTCAATATTTTCTTAGCCAGCTCACACCATTAAACATTCCTTTGTGTGAAATTTCATTGCAGCAGCTCATGAATCAAGAACTCAAGCATTATTTCAATTTGTGA 1290 0.4078 MVPLFPQNFCHVNLSFNDLKGPIPYGWFENQLIGNKVVCSDNPFYQAKFQFQPCPAQDNKVMHNLVIVLPIILFLIMVLLLLLYLRHIRIAIKNKHAKTMMSTENGDLFCIWNYDGSIAYEDIITATEDFDMKYCIGTGAYGSVYKAQLPSGKIVAVKKLHSFEAEVLAFDESFRNEVKVLSEIKHRHIVKLHGFCLHRRIMFLIYEYMEKGSLFSVLFDDVEAMELDWRKRVNNVKGTAHALSYLHHDCIPPIVHRDISASNVLLNSDWEPTVSDFGTARFLSLDSSNRTIVAGTIGYIASELAYTMVVSEKCDVYSFGVVALETLMGLHPKEILSSLQSASTSTDNGITLCEILDQRLPQPTLSVLLDIVRVATVAFACLNPNPCSRPTMKYVSQYFLSQLTPLNIPLCEISLQQLMNQELKHYFNL 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00046 429 Pfam Protein kinase domain 135 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g00046 429 SUPERFAMILY Protein kinase-like (PK-like) 114 398 IPR011009 -
Pumo5g00046 429 Gene3D Transferase(Phosphotransferase) domain 1 209 405 - -
Pumo5g00046 429 ProSitePatterns Tyrosine protein kinases specific active-site signature. 254 266 IPR008266 GO:0004672|GO:0006468
Pumo5g00046 429 FunFam MDIS1-interacting receptor like kinase 2 209 405 - -
Pumo5g00046 429 ProSiteProfiles Protein kinase domain profile. 130 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g00046 429 PANTHER LEUCINE RICH REPEAT KINASE 2 10 402 - -
Pumo5g00046 429 FunFam Leucine-rich repeat protein kinase family protein 94 208 - -
Pumo5g00046 429 ProSitePatterns Protein kinases ATP-binding region signature. 136 159 IPR017441 GO:0005524
Pumo5g00046 429 Gene3D Phosphorylase Kinase; domain 1 90 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00046 Pumo-Chr5 2478876 2480398 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00046 9 301 Receptor kinase-like Gene Family AT4G08850 45.603 5.54e-76 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pumo5g00046 Pkinase 3.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00046 - - gmx:100778268 663.299