Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00033 ATGGGGTTTAGGAATAATGCAATTCAGGCAGGGAGTTTGGATGTGGGAAAGTCAAAGGGAAGGACGCAAAAGGATGGTGATGAAAAGGAAATTGGGTGTTGTGTTAAATTCTGTTTCATTGGGAGCTGTATACCTTCAAGATCAAAGGTTGATAACTCCATAAGTGGCACTAGTGCTAACAGTGTGGAAAAAACATCTGCATATGAGAAAAGCAAGAAGGAAACAAATGCTCGTCCAGGGTCCTCTACATCAACCAGTAATGCAGAAAGTATCCCTTCCACTCCAAAATTCAGTGAGGAGTTGAAGGTTTCTTCTCGTTTGAGAAAATTTACATTCAATGAGCTAAAGTTGGCTACTAGGAATTTCAGACCAGAGAGTCTTCTTGGTGAGGGAGGGTTTGGTTGTGTGTTCAAGGGTTGGATTGAGGAAAATGGAACTGCACCTGTGAAACCTGGTACTGGGCTTACTGTTGCAGTCAAGACCCTCAACCATGATGGACTTCAGGGTCACAAAGAGTGGCTTGCAGAGTTAGACATTCTTGGTGACCTTGTCCATCCGAATCTGGTCAAATTGGTTGGTTACTGTATTGAAGATGACCAAAGATTATTGGTTTATGAATGTATGCCCCGTGGAAGTTTGGAGAACCACCTCTTCAGAAAAGGGTCGTTGCCTCTTCCTTGGTCTATTAGAATGAAAATTGCACTTGGTGCTGCAAAAGGTCTTGCTTTTCTCCATGAAGAAGCTCAGAGGCCTGTAATCTATCGTGATTTTAAGACGTCTAATATTCTGTTAGATGCGGAATACAATGCCAAGCTCTCTGATTTTGGACTCGCCAAAGATGGTCCTGAAGGGGAAAAGACACACATATCAACAAGAGTCATGGGAACATATGGTTATGCAGCTCCTGAGTATGTGATGACTGGACATTTGACATCAAAAAGTGATGTCTATAGTTTTGGAGTAGTGCTACTTGAAATGCTCACTGGCCGGCGTTCTATCGATAAAAATAGACCAAATGGGGAGCACAATCTTGTGGAGTGGGCAAGGCCTGTACTTGGGGACCGGAGGATGTTACTACGGATAATTGATCCTCGCCTTGAAGGTCACTTCTCTGTTAAAGGGTCACAGAAGGCTGCCCAGCTGGCGGCTCAATGCCTTAGCCGTGATCCGAAATCCAGACCTATGATGAGTGAAGTTGTTCAAGCTCTGAAGCCTTTGCAAAATCTCAAGGATTTGGCTATCTCATCTTATCACTTCCAGGTTGCGCGAGTAGATCGTACCATGTCCATGCCAAATTCCAAAAATGGTATGCAAGCACAGTTAGCATCTTTATCAAGAAAGGGTCAACATGTAAGGATCTTGTCAAGTCCAAAAGGTCCTCATGGTTCTCCACATCATCACTATATCAAGTCACCAAAACCTAATGGATAA 1431 0.4347 MGFRNNAIQAGSLDVGKSKGRTQKDGDEKEIGCCVKFCFIGSCIPSRSKVDNSISGTSANSVEKTSAYEKSKKETNARPGSSTSTSNAESIPSTPKFSEELKVSSRLRKFTFNELKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAELDILGDLVHPNLVKLVGYCIEDDQRLLVYECMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLAFLHEEAQRPVIYRDFKTSNILLDAEYNAKLSDFGLAKDGPEGEKTHISTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSIDKNRPNGEHNLVEWARPVLGDRRMLLRIIDPRLEGHFSVKGSQKAAQLAAQCLSRDPKSRPMMSEVVQALKPLQNLKDLAISSYHFQVARVDRTMSMPNSKNGMQAQLASLSRKGQHVRILSSPKGPHGSPHHHYIKSPKPNG 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00033 476 ProSitePatterns Serine/Threonine protein kinases active-site signature. 252 264 IPR008271 GO:0004672|GO:0006468
Pumo5g00033 476 ProSitePatterns Protein kinases ATP-binding region signature. 128 160 IPR017441 GO:0005524
Pumo5g00033 476 MobiDBLite consensus disorder prediction 450 476 - -
Pumo5g00033 476 FunFam Serine/threonine-protein kinase BIK1 89 207 - -
Pumo5g00033 476 PANTHER OS01G0588500 PROTEIN-RELATED 77 407 - -
Pumo5g00033 476 MobiDBLite consensus disorder prediction 77 95 - -
Pumo5g00033 476 FunFam Probable serine/threonine-protein kinase PBL8 208 423 - -
Pumo5g00033 476 SUPERFAMILY Protein kinase-like (PK-like) 96 403 IPR011009 -
Pumo5g00033 476 Pfam Protein kinase domain 125 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g00033 476 Gene3D Transferase(Phosphotransferase) domain 1 208 424 - -
Pumo5g00033 476 ProSiteProfiles Protein kinase domain profile. 122 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g00033 476 MobiDBLite consensus disorder prediction 50 95 - -
Pumo5g00033 476 MobiDBLite consensus disorder prediction 50 65 - -
Pumo5g00033 476 CDD STKc_IRAK 128 406 - -
Pumo5g00033 476 Gene3D Phosphorylase Kinase; domain 1 102 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00033 Pumo-Chr5 2278786 2283444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00033 78 419 Glycoside Hydrolase AT3G07070 51.977 1.16e-117 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Pumo5g00033 Pkinase 9.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00033 - - gmx:100305393 925.235