Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00031 ATGGCAGGAAGTGCAAGTAAGGTTACCTTTATCTTCTTGGTTGCTTTTGCCATTACTATTCCATGCCTTGAGGCGGGCATTGCTGAGTTTGACGATTTTCTCAAAGCACAAGCTAAAGAGGCCCATGAAATCGTTCTTCAATCATACGAGCCTGACCCTGTAAACGTTACTGCCGAGCTCAATATGCATGTTCATGCGGCATTGGGGGAGGCATTAAAGGAGGAATCAAACAACACAAGGAGGGAACTAAAGCAGAAATACCGTGGACCATGCTTGGCCACGAACCCAATTGATCGTTGTTGGAGGTGTAGGAAAGATTGGGCACAAGACCGTTTTAGGTTAGCCAATTGTGTCAAGGGTTTCGGAAGAAGGGCCGTCGGAGGACTCGGTGGCAAAATCTACGTAGTCACCGATCCCTCCGACGACGATCCGGTTAACCCTAGACCTGGGACTCTCAGGCACGGTGTTCTCCAAAGGGAACCGCTGTGGATCATATTTGCACGTAGCATGGTCATCAAGTTGAACTTCGAGTTGTTGATTTTGTCGGACAAGACCATCGACGGTCGCGGCGCGAATGTGGTGATCAAGGATGGTGCTGGCCTTACCATGCAGTTTGTGAACAACGTTATTATTCACGGGGTTCACATAAAAAAGATCAAGTCCATGGATGGTGCCATGATTCGGGACTCGTGGAACCACGTTGGTATAAGAACAAGGTGTGATGGGGATGCTATCTCCGTTTTCGGTTCTTCTAACATTTGGCTCGATCATATTTCGCTGTCTGATTGCGAGGATGGTCTCATCGACGTTATCCAGGGCTCCACTGGAATCACCATCTCAAATTGCCACATGACCAAACATAACGATGTGATGCTGTTTGGAGCTAGCGACACCTACTCCGGCGACAAGTTAATGCAGATCACAGTGGCATTCAACCACTTTGGTCAGGGGCTGATCCAGAGAATGCCCAGATGCAGATGGGGTTTTGTGCATGTGGTAAACAATGACTACACTCACTGGCTGATGTATGCAATTGGTGGCAGTTCAGGGCCAACGATTCTGAGCCAGGGAAACCGGTTCATTGCGCCGAACAACAATGCTGCAAAGGAAGTCACACACAGGGACTATGCTGCACCTGCTGTGTGGGGCAAATGGCAGTGGAGATCGGAGAACGATCTCTTCATGAATGGGGCCACGTTTCTTCAGTCAGGAGAACCTCTTAAGAAGCTTCCATTCAACAAAGGGTTCCTAATGAAACCTAGACATGGGTCCCAAGCCAACAGGCTCACACGTTTTTCTGGTGCCCTAAATTGCAAGGTGGGTAAGCCTTGTTAG 1335 0.4884 MAGSASKVTFIFLVAFAITIPCLEAGIAEFDDFLKAQAKEAHEIVLQSYEPDPVNVTAELNMHVHAALGEALKEESNNTRRELKQKYRGPCLATNPIDRCWRCRKDWAQDRFRLANCVKGFGRRAVGGLGGKIYVVTDPSDDDPVNPRPGTLRHGVLQREPLWIIFARSMVIKLNFELLILSDKTIDGRGANVVIKDGAGLTMQFVNNVIIHGVHIKKIKSMDGAMIRDSWNHVGIRTRCDGDAISVFGSSNIWLDHISLSDCEDGLIDVIQGSTGITISNCHMTKHNDVMLFGASDTYSGDKLMQITVAFNHFGQGLIQRMPRCRWGFVHVVNNDYTHWLMYAIGGSSGPTILSQGNRFIAPNNNAAKEVTHRDYAAPAVWGKWQWRSENDLFMNGATFLQSGEPLKKLPFNKGFLMKPRHGSQANRLTRFSGALNCKVGKPC 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00031 444 PANTHER PECTATE LYASE 18-RELATED 42 442 IPR045032 GO:0030570
Pumo5g00031 444 SMART amb_all 169 366 IPR002022 -
Pumo5g00031 444 SUPERFAMILY Pectin lyase-like 95 435 IPR011050 -
Pumo5g00031 444 Gene3D - 94 437 IPR012334 -
Pumo5g00031 444 Pfam Pectate lyase, N terminus 27 83 IPR007524 GO:0030570
Pumo5g00031 444 PRINTS Pollen allergen Amb family signature 343 362 IPR018082 -
Pumo5g00031 444 PRINTS Pollen allergen Amb family signature 177 193 IPR018082 -
Pumo5g00031 444 PRINTS Pollen allergen Amb family signature 241 262 IPR018082 -
Pumo5g00031 444 PRINTS Pollen allergen Amb family signature 415 438 IPR018082 -
Pumo5g00031 444 PRINTS Pollen allergen Amb family signature 385 409 IPR018082 -
Pumo5g00031 444 PRINTS Pollen allergen Amb family signature 117 134 IPR018082 -
Pumo5g00031 444 PRINTS Pollen allergen Amb family signature 141 166 IPR018082 -
Pumo5g00031 444 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
Pumo5g00031 444 Pfam Pectate lyase 180 360 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00031 Pumo-Chr5 2256102 2258833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00031 6 444 Polysaccharide Lyase AT5G15110 54.701 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00031 K01728 - gmx:100780236 802.357
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00031 5 2256102 2258833 Pumo5g00031 5 2256102 2258833 ECH