Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00030 ATGGCAATGATAAAAGACAATATTGAAGTGAGCCTTGGGAGGAGCCAAATGTCCATGGCAGAAGGTGAGCTCCTAGGAACACGGGGTGTCAAGAGACGACGAAGAGAGGTTGCTGCAGCAGCAAGCAGTGGCGATGATAACCACCAGCAGCAGTTACCACGACAAGAAGTTGGTGAAAATACTACAATCAACACTACAAAGAGAAGCTCAAGATTTCGCGGTGTTAGCAGACATAGATGGACTGGTCGGTATGAAGCTCACTTGTGGGACAAACTCTCTTGGAACATAACACAAAAGAAGAAAGGGAAGCAAGGGGCTTATGATGAAGAAGAATCTGCTGCCAGAGCATATGATTTAGCTGCACTTAAGTATTGGGGAACTTCAACTTTCACCAATTTTCCAATACCAGATTACGAGAAAGAGATAGAAATAATGCAGACTATGACCAAAGAGGAGTATTTGGCCACTTTAAGGAGAAAGAGCAGTGGCTTTTCAAGAGGTGTATCAAAGTATAGGGGTGTTGCAAGGCACCACCACAATGGTAGATGGGAAGCAAGAATAGGAAGGGTTTTTGGAAACAAGTATCTCTACCTTGGCACCTACAGCACCCAAGAGGAAGCTGCGCGTGCTTATGACATAGCAGCCATTGAGTACAGAGGAATTCATGCTGTAACAAACTTTGATTTGAGCACTTACATAAAATGGTTAAAGCCTTCAGGAGGAAGCACCCTAGAAGCAAAACTTGAATCAGATGCATTACTAGAGTCTCAAAAGGTGGCATCCCCATCTAACTATGCTCTAACAGAAGAGTCAAAGGCTTTGGCCCTTCACAACAGTTTTTTCAGTCCAGATTCTCTGTATTCCCCTGTAAGGCAAGAAAATTTTGGAAACAAAACCTACCAATTCTCAAGCAATAAGTCATCTTCTCCCACTGCACTTGGCCTCCTTCTCCGCTCTTCGTTATTTAGAGAATTGGTTGAAAAGAATTCAAATGTTCCTGGAGATGAAGCCGATGGGGAAGTCACAAAGGATCACCAGCCACAAATAGCTAGTGATGATGATCTGGGTGGAATCTTCTATGATAGCATTGGTGATATCCCATTTGTCTGTGATCCCAATAGATACAACTTGGAATTGCAAGAGAGAGACCTGCACTCAATATTTTGA 1167 0.4319 MAMIKDNIEVSLGRSQMSMAEGELLGTRGVKRRRREVAAAASSGDDNHQQQLPRQEVGENTTINTTKRSSRFRGVSRHRWTGRYEAHLWDKLSWNITQKKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFPIPDYEKEIEIMQTMTKEEYLATLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGIHAVTNFDLSTYIKWLKPSGGSTLEAKLESDALLESQKVASPSNYALTEESKALALHNSFFSPDSLYSPVRQENFGNKTYQFSSNKSSSPTALGLLLRSSLFRELVEKNSNVPGDEADGEVTKDHQPQIASDDDLGGIFYDSIGDIPFVCDPNRYNLELQERDLHSIF 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00030 388 CDD AP2 70 135 IPR001471 GO:0003700|GO:0006355
Pumo5g00030 388 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 49 294 - -
Pumo5g00030 388 FunFam AP2-like ethylene-responsive transcription factor 169 230 - -
Pumo5g00030 388 CDD AP2 169 230 IPR001471 GO:0003700|GO:0006355
Pumo5g00030 388 MobiDBLite consensus disorder prediction 43 70 - -
Pumo5g00030 388 SMART rav1_2 71 140 IPR001471 GO:0003700|GO:0006355
Pumo5g00030 388 SMART rav1_2 170 234 IPR001471 GO:0003700|GO:0006355
Pumo5g00030 388 Gene3D AP2/ERF domain 70 135 IPR036955 GO:0003700|GO:0006355
Pumo5g00030 388 Gene3D AP2/ERF domain 169 230 IPR036955 GO:0003700|GO:0006355
Pumo5g00030 388 SUPERFAMILY DNA-binding domain 70 135 IPR016177 GO:0003677
Pumo5g00030 388 ProSiteProfiles AP2/ERF domain profile. 71 134 IPR001471 GO:0003700|GO:0006355
Pumo5g00030 388 ProSiteProfiles AP2/ERF domain profile. 170 228 IPR001471 GO:0003700|GO:0006355
Pumo5g00030 388 Pfam AP2 domain 70 126 IPR001471 GO:0003700|GO:0006355
Pumo5g00030 388 Pfam AP2 domain 169 220 IPR001471 GO:0003700|GO:0006355
Pumo5g00030 388 MobiDBLite consensus disorder prediction 34 71 - -
Pumo5g00030 388 SUPERFAMILY DNA-binding domain 169 230 IPR016177 GO:0003677
Pumo5g00030 388 PRINTS Ethylene responsive element binding protein signature 210 230 IPR001471 GO:0003700|GO:0006355
Pumo5g00030 388 PRINTS Ethylene responsive element binding protein signature 72 83 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00030 Pumo-Chr5 2250721 2252769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00030 67 232 AP2-EREBP Transcription Factor Family AT5G57390 68.639 1.80e-79 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Pumo5g00030 AP2 1.8e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00030 - - gmx:100792612 688.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00030 5 2250721 2252769 Pumo5g00030 5 2250721 2252769 ECH