Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00009 ATGGATTCGGATCAGGGCAAGCTTTTCATCGGTGGGATTTCATGGGATACGACGGAGGACAAGCTCAAGGAGCATTTTGGCAACTACGGCGACGTTTTGAGCACTTCCGTCATGCGGGAGAAGAACACTGGTAAGCCCCGAGGCTTCGGTTTCGTCGTTTTCGCGGATCCTACCATTCTAGATAGGGTTTTGGAAGACAAACATGTCATAGATGGCAGAACGGTAGATGCCAAAAAGGCTTTCTCAAGAGAGGATCAACAAATCTCTGTCACTTCGAGAGGTGGAAATTCCAATTCTGGCATGAATTCTGGAAATGGAGGAAACATCAGGACTAAAAAGATATTTGTTGGAGGGTTGCCTCCCACCCTGACTGAAGAAAAATTTCGTCAGTACTTTGAGTCTTATGGACATGTAACTGATGTAGTAGTCATGTATGACCAGAATACTGGACGTCCACGAGGATTTGGGTTTATTTCATTTGATACTGAGGAAGCGGTTGATAGGGTTTTGCACAAATCATTTCATGATTTAAATGGTAAACAAGTTGAGGTTAAGCGTGCACTTCCCAAGGATGCCAATCCTGGTGCAAGTGGCCGGATGGGTGGTGCTGGAGGTGGTGGTGCTGGAATTGGTGGGTATCAAGGGTATGGGGCATCTGGTGGCAACCAAAATGCATATGATGGTCGTATGGATTCTAGTAGGTATATGCAGCCTCAAAGTGCAGCAGGTGGATTCCCTCCTTATGGTTCTTCTGCCTATAGTGCTCCTGGGTATGGGTATGGTCCAGCCAATAATGGCATTGGTTATGGGGCATACGGAAGTTATGGTGGTGCCACTGCTGGGTATGGTGGACCTGCTGGTGCAACATATGGGAATCCTAATGTCCCTAATGCTGCTTATGCTGGTGGTCCACCAGGTGGCCCTCGAAGTTCATGGCCTGCTCAGGCTCCTTCTGGTTATGGATCTATGGGCTATGGGAACACTGCTCCCTGGGGTGCTCCAAGTGGTGGTGCTGGATCTGGTGGCGGTGGTCCTGGTTCAGGAACTGCAGGTCAGTCCCCTGGTGGAGCTGCTGGATATGGGAATCAAGGTTATGGATATGGTGGGTATGGTGGATATGGTGGAAGTGATAGTTCTTATGGGAATTCAAGTGCATACGGTACTGTTGGCGGACGTACTGGGAGTGCTCCAAACAGTAATGCTAGTGCTCCTGGTGGGAGTGAACTAACAAGTAGTGGTGGCAGTGGCAACTATATGGGTGGTGGCTATGGGGATGCAAATGGAAATTCAGGTTATGGAAATGCAGCTTGGAGATCTGAACAAACTCATGCATCTGGAAATTATGGGACTCCTCAGGGAAATGGTGGGCAAGTTGGTTATGGTGGTGGCTATGGTGGTGCTCAGTCTCGACAAGCCCAACAGCAGTAA 1428 0.4881 MDSDQGKLFIGGISWDTTEDKLKEHFGNYGDVLSTSVMREKNTGKPRGFGFVVFADPTILDRVLEDKHVIDGRTVDAKKAFSREDQQISVTSRGGNSNSGMNSGNGGNIRTKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDTEEAVDRVLHKSFHDLNGKQVEVKRALPKDANPGASGRMGGAGGGGAGIGGYQGYGASGGNQNAYDGRMDSSRYMQPQSAAGGFPPYGSSAYSAPGYGYGPANNGIGYGAYGSYGGATAGYGGPAGATYGNPNVPNAAYAGGPPGGPRSSWPAQAPSGYGSMGYGNTAPWGAPSGGAGSGGGGPGSGTAGQSPGGAAGYGNQGYGYGGYGGYGGSDSSYGNSSAYGTVGGRTGSAPNSNASAPGGSELTSSGGSGNYMGGGYGDANGNSGYGNAAWRSEQTHASGNYGTPQGNGGQVGYGGGYGGAQSRQAQQQ 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00009 475 CDD RRM2_Hrp1p 113 190 - -
Pumo5g00009 475 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Pumo5g00009 475 MobiDBLite consensus disorder prediction 381 475 - -
Pumo5g00009 475 MobiDBLite consensus disorder prediction 84 107 - -
Pumo5g00009 475 MobiDBLite consensus disorder prediction 432 454 - -
Pumo5g00009 475 SUPERFAMILY RNA-binding domain, RBD 111 220 IPR035979 GO:0003676
Pumo5g00009 475 MobiDBLite consensus disorder prediction 336 355 - -
Pumo5g00009 475 MobiDBLite consensus disorder prediction 381 417 - -
Pumo5g00009 475 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Pumo5g00009 475 FunFam heterogeneous nuclear ribonucleoprotein 1 107 229 - -
Pumo5g00009 475 SUPERFAMILY RNA-binding domain, RBD 3 109 IPR035979 GO:0003676
Pumo5g00009 475 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Pumo5g00009 475 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Pumo5g00009 475 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 180 IPR000504 GO:0003723
Pumo5g00009 475 Gene3D - 107 230 IPR012677 -
Pumo5g00009 475 Gene3D - 4 88 IPR012677 -
Pumo5g00009 475 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 475 - -
Pumo5g00009 475 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Pumo5g00009 475 SMART rrm1_1 7 78 IPR000504 GO:0003723
Pumo5g00009 475 SMART rrm1_1 113 185 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00009 Pumo-Chr5 889401 891168 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00009 8 200 Eukaryotic Initiation Factors Gene Family AT2G23350 24.378 1.36e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00009 K14411 - gmx:100786882 604.364