Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00001 ATGGATCCTTATGTGATTCTCAGTTATCGCGCACAAGAGCTCCGAAGCAGTGTGGCTAAAGGTGCAGGATCTAAACCCCGTTGGAATGAAAGCTTCCTTTTCACTGTTTCTGACAGTGTATCTGAACTTAATCTGAGGCTCATGGACCAGGATACGTTAACTAGTGATGATTTCCTTGGCGAGGCAAAAATTGATCTGGAACCAGTGTTTGCTGTGGGGAGCATTCCAGAAACTTCTTACAATGTTGTGAAGGACCAGAAGTACTGTGGGGAGGTCAAGGTGGCACTCACCTTTAATCCTGAGAGAGGCAGTGGAGTCGGCTACTACGAAGAATAA 336 0.4613 MDPYVILSYRAQELRSSVAKGAGSKPRWNESFLFTVSDSVSELNLRLMDQDTLTSDDFLGEAKIDLEPVFAVGSIPETSYNVVKDQKYCGEVKVALTFNPERGSGVGYYEE 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00001 111 ProSiteProfiles C2 domain profile. 1 79 IPR000008 -
Pumo5g00001 111 PANTHER C2 DOMAIN-CONTAINING 1 100 - -
Pumo5g00001 111 Gene3D C2 domain 1 101 IPR035892 -
Pumo5g00001 111 SMART C2_3c 2 78 IPR000008 -
Pumo5g00001 111 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1 101 IPR035892 -
Pumo5g00001 111 Pfam C2 domain 1 70 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00001 Pumo-Chr5 328919 330696 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00001 2 70 C2H2 Transcription Factor Family AT4G21160 37.681 1.72e-12 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00001 - - gmx:100814819 206.838