Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo58g00002 ATGGCTCATCATCTGCAGGGAGGTCAACCTTCTTCAATCAAAGGGATAGAAAGAGTGATTGTAGAAAAAAACAGGAGAGACCATATGAAGTACCTCTTTTCCATGCTTAACTCTCTTCTCCCTACCAATAATATTCCCAGGGGAGGAGCATTATCACGTGTTGATCAAATAGACGAGGCTATCAACTACATCAAGAACTTAGAGACAAAGGTGAAGATGGCGCAGGAGAAGAAAGAAAGCTTGATGCAAAGGAAGAGATCTCGCAGTGACTGTTCGAGTACTTCTGAAGCACCAAAAATTGAGATTCATGAAATGGGTTCCTCACTACAAATCATTCTGACGTGTGGGCTTGATAAACAGTTCAATTTGAGTGAAATTATTCGCATACTACATGAAGAGAACATAGAGGTCAAGAGCGCACATTCTTCACTCGCTGGAAACTCAATGCTACATGTTGTGCACGCAGAACAATTCTTTCAAGTAGGAACAACCGCAATGAGTGAGAGACTGAAAAGTAAATGTTTTTATGGAAATCCTAGTGGAAGTCAGGATCTGGTGGCCTTATCAGGAACTGGATTGTTGGCTTCTCAGGATCTTGTGAAGTTACATCTAATCTAA 618 0.411 MAHHLQGGQPSSIKGIERVIVEKNRRDHMKYLFSMLNSLLPTNNIPRGGALSRVDQIDEAINYIKNLETKVKMAQEKKESLMQRKRSRSDCSSTSEAPKIEIHEMGSSLQIILTCGLDKQFNLSEIIRILHEENIEVKSAHSSLAGNSMLHVVHAEQFFQVGTTAMSERLKSKCFYGNPSGSQDLVALSGTGLLASQDLVKLHLI 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo58g00002 205 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 18 85 IPR036638 GO:0046983
Pumo58g00002 205 Pfam Helix-loop-helix DNA-binding domain 20 68 IPR011598 GO:0046983
Pumo58g00002 205 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 16 172 - -
Pumo58g00002 205 Coils Coil 57 84 - -
Pumo58g00002 205 Gene3D - 16 96 IPR036638 GO:0046983
Pumo58g00002 205 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 13 67 IPR011598 GO:0046983
Pumo58g00002 205 SMART finulus 19 73 IPR011598 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo58g00002 14 155 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 37.179 2.61e-20 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo58g00002 HLH 2.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo58g00002 - - pvu:PHAVU_005G102700g 214.157