Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo57g00001 ATGGATACCCCAATGACACTAACCGGCTTGCTCCGCGACGTCGCCGGAAAATTCCCCTCCCTCCGAGCCATCTCCGTCGCCGGAAAATTCGACCTCACCCACTCCCGCCTCCTCCAATTGACCGAATCCGCCGCCGCTGGCTTGCTCGCCGCCGGAGTCAAACCCGGCGACGTCGTCGCCCTCACCTTCCCCAACACCGTCGAGTTTGTTGTCATGTTTCTAGCCGTCATTCGAGTGCGCGCCACAGCCGCGCCGCTAAACTCAGCTTACACAGCCGAGGAGTTCGAGTTTTACTTATCCGACTCCGAGTCCAAGCTTCTACTAACATCGTTAGAAGGAAACAACCCAGCTCAAGCCGCAGCTTCAAAACTCAGCATCCCCCACGGCACGGCTTCGATAACTCAAGCCGAGAACAACGAAGCCGAGCTGAGCCTCTCGTTAAGCCACCCCGAGTCAGACTCTATTAACTCAGTTGAGTCACTCGTTAACGATCCTGCTGACGTGGCGCTTTTCCTTCACACCTCGGGCACCACGAGCCGTCCCAAGGGAGTGCCTTTGACACAACACAACTTGTTCTCTTCCGTGAACAACATTAAATCGGTGTACCGACTCACCGAGTCCGACTCGACGGTGATCGTGCTTCCGCTCTTCCACGTGCACGGTTTGATCGCGGCGTTGCTGAGTTCACTCGGCGCCGGCGCGGCGGTGGCGCTGCCGGAGGCGGGGAGGTTCTCGGCCTCGTCGTTCTGGAAGGACATGATCAAGTACAACGCCACGTGGTACACCGCGGTTCCCACCATACACCAGATCATACTGGATCGCCACTCGAACAACCCCGAACCGGTTTACCCGCGGCTCCGGTTCATCCGAAGCTGCAGCGCGTCGCTCGCACCGGCTATTCTCGATAAACTCGAGGAGGCATTCAGTGCGCCCGTGTTGGAGGCTTATGCGATGACGGAAGCGTCGCATTTGATGGCTTCCAACCCTTTGCCGAAAGATGGGCCCCACAAGGCCGGGTCGGTTGGGAGGCCCGTGGGCCAGGAAATGGTTATTTTGGACGAAGCGGGTCGGGTTCAAGAGGATGAAGTTAGCGGAGAAGTTTGCATTCGGGGTTCTAATGTTACGAAGGGTTATAAAAATAACGTGGATGCCAATACGGCGGCGTTTCAGTTTGGTTGGTTTCACACCGGTGATGTTGGTTACTTGGATTCTGATGGGTATTTGCATCTCGTGGGTCGGATCAAGGAACTCATCAACCGTGGAGGAGAAAAGATATCACCAATAGAAGTGGATGCTGTCCTTCTTTCACACCCAGACATTGCTCAGGCAGTTGCTTTCGGAGTGCCTGATCCCAAGTATGGGGAGGAGATACATTGTGCTGTGATCCCAAGAGAAGGATCAGACATTGATGAGGCAGAGGTGCTAAGATATTGCAAGAAGAATCTTGCATCTTTCAAAGTCCCCAAAAAGGTCTTCCTTACTGATTCTTTGCCCAAGACTGCCACTGGAAAGATTTTGCGTCGTCTTGTAGCAGAACACTTTGTCTCTCAAATTTGA 1557 0.5446 MDTPMTLTGLLRDVAGKFPSLRAISVAGKFDLTHSRLLQLTESAAAGLLAAGVKPGDVVALTFPNTVEFVVMFLAVIRVRATAAPLNSAYTAEEFEFYLSDSESKLLLTSLEGNNPAQAAASKLSIPHGTASITQAENNEAELSLSLSHPESDSINSVESLVNDPADVALFLHTSGTTSRPKGVPLTQHNLFSSVNNIKSVYRLTESDSTVIVLPLFHVHGLIAALLSSLGAGAAVALPEAGRFSASSFWKDMIKYNATWYTAVPTIHQIILDRHSNNPEPVYPRLRFIRSCSASLAPAILDKLEEAFSAPVLEAYAMTEASHLMASNPLPKDGPHKAGSVGRPVGQEMVILDEAGRVQEDEVSGEVCIRGSNVTKGYKNNVDANTAAFQFGWFHTGDVGYLDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDPKYGEEIHCAVIPREGSDIDEAEVLRYCKKNLASFKVPKKVFLTDSLPKTATGKILRRLVAEHFVSQI 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo57g00001 518 CDD FACL_fum10p_like 19 512 IPR045310 GO:0016874
Pumo57g00001 518 FunFam 4-coumarate--CoA ligase 2 416 517 - -
Pumo57g00001 518 Pfam AMP-binding enzyme C-terminal domain 429 504 IPR025110 -
Pumo57g00001 518 ProSitePatterns Putative AMP-binding domain signature. 171 182 IPR020845 -
Pumo57g00001 518 Gene3D - 414 516 IPR045851 -
Pumo57g00001 518 PANTHER ACYL-COA SYNTHETASE 5 515 - -
Pumo57g00001 518 Pfam AMP-binding enzyme 12 420 IPR000873 -
Pumo57g00001 518 SUPERFAMILY Acetyl-CoA synthetase-like 4 516 - -
Pumo57g00001 518 FunFam Peroxisomal-coenzyme A synthetase 6 413 - -
Pumo57g00001 518 Gene3D - 6 413 IPR042099 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo57g00001 2 518 Monolignol Biosynthesis Gene Families AT4G05160 30.206 2.81e-59 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo57g00001 K22133 - gmx:100779306 931.784