Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo55g00012 ATGGCAGATAGCGTTGTTAGCTTCCTGGTGCAGAACTTGTCACGGCTGCTTGAAGATGAACACAAGTTGCTTTCTGGCGTGGATGCCAAAGTCAATTCCTTGCGCAATGAGCTCAGATTTATTGATGTCTTCCTCAGGAGCTCTGAGGGGAACCGCAGTGACGAGACGGTGAAAGAAGTGGTGAACCAAATAAGAGATGTTGCCCACAAAGCTGAAGATGTAGTTGACATGTATGTTTCCAGCATCGCCCAGCACAAACGCAGAAACATACTTAGAAAGTTATTCCACTTCAAAAGACGATTCAAGGTGCTTCACCAAGTCAACACTGACATAGAGAACATCAAGATCCGTATTGATGAGATTTATAACAACTGGGAGAGATATGGCATCAGAGAAGGTGAATTCCAAAGCGAAGATGCTGCACCAGCAGTAGAATCACTCCGCGAAAGGAGGAGGGATGTGGAGGAAGAAGATGTAGTGGGCTTAGTGCGTGATTCCAGCATTTTGATTCAGCAGCTCAAGGAAAGTGGTTCGTCTCTTAAGGTTGTTTCCATAATCGGAATGGGAGGGTTGGGTAAGACCACTCTTGCCCGTAAGATCTATAACGACAACATTGTGAAGAAGCTGTTTCCTTGCCGTGCATGGGGTTATGTGTCTAACGATTACAGACCCAAGGAGCTTTTTCTGAGCCTTCTCAAGTGTTTAATGTCATCCACCTCTGAATGTGAAAATTTAAGTGAAGAGGATCTGAAGAAGAGGGTAAAAAAATGCTTGAAGGGGAAGAAGTATCTTGTAGTGCTTGATGACATCTGGAAAACCCAAGTATGGGATGAGATTAAAGGAGCCTTTCCGGAGTACGAAACAGGCAGCAGAATACTAATAACAAGTCGTAATAAAGAGGTGGCACTCTATGCAGGAACCACGTCTCCCTACGACCTTCCCTTCCTCAATGAAGATGAAAGTTGGGAACTCTTCTCTAAGAAGGTGTTTCGAGGTGTAGAATGCCCATCTGATTTAGAGCCTCTGGGTAGATCCATTGCCAAAACTTGTGGGGGTTTACCACTTGCCATTGTGGTCTTAGCAGGACTCGTTGCCAAGAAGGAGAAGTCACAAAGGGAGTGGTCGAGAATCAAGATGAGTTGGAATCTTACTGAGGACAGGATTGAAGTGATGGATATACTAAAGCTCAGCTATGACGGCTTGCCTCGAAGATTAAAGCCTTGTTTTCTATATTTTGGAATCTATCCTGAAGACTATGAGATCAGTGCAAGAGAAGTGATCCAACTTTGGGTAGCTGAAGGGTTCATACAACCACAAGAAACAGCAGAACCCGAAGATATTGCTGACTATTACTTGGATGAGCTGGTGGATCGCAGCTTGGTGCAAGTGGCAAAAAGGAGGAGTGATGGGGGTGTCAAGACATGTCGGATTCATGATCTTCTACGTGATCTCTGCATATCAGAGAGCAAATCTGATAAGTTTCTAGAGGTTTGCACAAAGTCCAATATTGATGCGGTAAGCAATACCAATCCCCGTAGGTTGTCGTTCCACTGCAATCCACAGTCTTATGTCTCTGCAGACACATTTGACAAATCATGCACTCGTTCTGTGTTCATCTTTGCTAGTGGTGGTAGTATGCCCCTGGTTTATATTTTGAAAAGCTTCAAGTTGGCTCGGGTGCTTCATTTAGAATCGTACGAACTGTTATGGAACTTATGCTCTTGTTCACTTCCCAGCAATTTCAAGAGGATGATCCATCTAAGATACTTGAGAATAAGGGTCGTCAGCCTTCCAGCTTGTGTATGCAGCCTTTGGAATCTAGAAACACTGCTTGTAAGATATGATACCACAGTACCCAGGGAAATTTGGATGTTGAAGCGACTGAGACATCTTTATTTGATAGGGGGAAAGAAGTTACCGGTCCTGCCAAAAGCAAATAGAATGGAGAATCTCCAAACACTTTGGTTAAGTGCTAAGGATCCACAAATTATTTCCCTGCTGAACAATGGCATATTTCCTAGTTTGGGAAAATTAGCCTTGCGCTCTTATCATGGTAGAGAATCACTTATGTTATCAAGTCTACACCACCTAAGCAATCTTCATAGCCTAAAAATCATTGACAATCTAGAACTTCCATTAGACACCAATGCCGTTTCCATCAAATCTTACTAA 2172 0.4342 MADSVVSFLVQNLSRLLEDEHKLLSGVDAKVNSLRNELRFIDVFLRSSEGNRSDETVKEVVNQIRDVAHKAEDVVDMYVSSIAQHKRRNILRKLFHFKRRFKVLHQVNTDIENIKIRIDEIYNNWERYGIREGEFQSEDAAPAVESLRERRRDVEEEDVVGLVRDSSILIQQLKESGSSLKVVSIIGMGGLGKTTLARKIYNDNIVKKLFPCRAWGYVSNDYRPKELFLSLLKCLMSSTSECENLSEEDLKKRVKKCLKGKKYLVVLDDIWKTQVWDEIKGAFPEYETGSRILITSRNKEVALYAGTTSPYDLPFLNEDESWELFSKKVFRGVECPSDLEPLGRSIAKTCGGLPLAIVVLAGLVAKKEKSQREWSRIKMSWNLTEDRIEVMDILKLSYDGLPRRLKPCFLYFGIYPEDYEISAREVIQLWVAEGFIQPQETAEPEDIADYYLDELVDRSLVQVAKRRSDGGVKTCRIHDLLRDLCISESKSDKFLEVCTKSNIDAVSNTNPRRLSFHCNPQSYVSADTFDKSCTRSVFIFASGGSMPLVYILKSFKLARVLHLESYELLWNLCSCSLPSNFKRMIHLRYLRIRVVSLPACVCSLWNLETLLVRYDTTVPREIWMLKRLRHLYLIGGKKLPVLPKANRMENLQTLWLSAKDPQIISLLNNGIFPSLGKLALRSYHGRESLMLSSLHHLSNLHSLKIIDNLELPLDTNAVSIKSY 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo55g00012 723 FunFam Probable disease resistance protein At1g61300 142 309 - -
Pumo55g00012 723 CDD RX-CC_like 2 121 IPR038005 -
Pumo55g00012 723 Gene3D - 145 308 IPR027417 -
Pumo55g00012 723 PANTHER DISEASE RESISTANCE PROTEIN RP 33 705 IPR044974 GO:0006952
Pumo55g00012 723 FunFam Probable disease resistance protein At1g63360 398 487 - -
Pumo55g00012 723 Gene3D - 315 402 IPR042197 -
Pumo55g00012 723 SUPERFAMILY L domain-like 476 708 - -
Pumo55g00012 723 Gene3D Ribonuclease Inhibitor 495 716 IPR032675 -
Pumo55g00012 723 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 145 412 IPR027417 -
Pumo55g00012 723 Gene3D - 403 487 IPR036388 -
Pumo55g00012 723 Pfam Rx N-terminal domain 5 88 IPR041118 -
Pumo55g00012 723 Pfam NB-ARC domain 169 399 IPR002182 GO:0043531
Pumo55g00012 723 PRINTS Disease resistance protein signature 350 364 - -
Pumo55g00012 723 PRINTS Disease resistance protein signature 182 197 - -
Pumo55g00012 723 PRINTS Disease resistance protein signature 257 271 - -
Pumo55g00012 723 Gene3D - 5 111 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo55g00012 180 484 WRKY Transcription Factor Family AT5G45050 26.774 3.33e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo55g00012 - - gmx:106797945 992.26