Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo55g00010 ATGATTATTTTAACCTTAACTTTAAATGTCTATGACGAATGGCAGTTTGTTACTGCATGCCTCTTCTCAAAGCCTATCCTTTTGTGCAGGGAAGTCTTTTGTCCCATTGTTGGTTGCGGTGCACGCTTGACTTCAATGGAGGACTTTGAAAATCACTATAACGCAAGGCATACCGCATCATGTTCTGTGTGCTCCAGAGTCTACCCAACATCTAGGTTGCTCAGCATACATGTATCTGAAGTGCATGATTCTTTCTTTCAGGCAAAAGTTGCACGTGGCTACGATATGTATGAATGCTTGGTGGAAAAGTGTGGTTTGAAATTCAAAAGCTACAATAGTAGGCAGCAGCATCTGGTTGACAAGCATAAATTCCCCACCTCATTTGAGTTTTTCAAGAAGGCTAAGCCTTCAAAGAAACAGAGGTTGAAGTCCCAACGCAAACAAGCTGTTCGTAAGGAGGATGCTTCAGGAATGATGGAAGTGGAAAATGCAGCCATGGATGACCTTGTTTCAGCAGTCTCTAAATTGAGCACTTCTGACTCCACCCCTTCATCTATCAGCTTTGGTCGCCGCCACAAAGGCTTGTCATTCGTACCTCGAGCTGTTCAGCATGGAGGTGGATCAAACTCAGCAGCATCTGTGACAAAGAGATAA 654 0.4373 MIILTLTLNVYDEWQFVTACLFSKPILLCREVFCPIVGCGARLTSMEDFENHYNARHTASCSVCSRVYPTSRLLSIHVSEVHDSFFQAKVARGYDMYECLVEKCGLKFKSYNSRQQHLVDKHKFPTSFEFFKKAKPSKKQRLKSQRKQAVRKEDASGMMEVENAAMDDLVSAVSKLSTSDSTPSSISFGRRHKGLSFVPRAVQHGGGSNSAASVTKR 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo55g00010 217 MobiDBLite consensus disorder prediction 197 217 - -
Pumo55g00010 217 ProSitePatterns Zinc finger C2H2 type domain signature. 61 82 IPR013087 -
Pumo55g00010 217 ProSitePatterns Zinc finger C2H2 type domain signature. 99 122 IPR013087 -
Pumo55g00010 217 SMART c2h2final6 97 122 IPR013087 -
Pumo55g00010 217 SMART c2h2final6 32 57 IPR013087 -
Pumo55g00010 217 SMART c2h2final6 59 82 IPR013087 -
Pumo55g00010 217 ProSitePatterns Zinc finger C2H2 type domain signature. 34 57 IPR013087 -
Pumo55g00010 217 PANTHER UNCHARACTERIZED 29 205 IPR039258 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo55g00010 30 213 C2H2 Transcription Factor Family AT5G14140 64.249 1.39e-85 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo55g00010 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo55g00010 - - gmx:100819557 345.51