Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo53g00001 ATGCCTGTTGTTGATATAGAGGCTCCAAGAGAAGAAAAAGAAAAATGCCCCATCTATCAGGAAGAGTTTGAAGATGGAGATGAAATTGGGAAGCTACACTCATGTGTACACAAGTTTCACGCTCATTGCATCCAACAGTGGCTAATGTGCAAGAACTTTTGCCCAGTCTGCAAACAAATTTGGTTGGAAACCAATGAAGTTGGACCATCAGTTGATGTAATTAATATTGAAGATGATGATGACAATGACAATGCCAATGCTTAG 264 0.3939 MPVVDIEAPREEKEKCPIYQEEFEDGDEIGKLHSCVHKFHAHCIQQWLMCKNFCPVCKQIWLETNEVGPSVDVINIEDDDDNDNANA 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo53g00001 87 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 73 IPR013083 -
Pumo53g00001 87 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 10 59 IPR045191 GO:0061630
Pumo53g00001 87 Pfam Ring finger domain 15 58 IPR001841 -
Pumo53g00001 87 ProSiteProfiles Zinc finger RING-type profile. 16 58 IPR001841 -
Pumo53g00001 87 SUPERFAMILY RING/U-box 10 64 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo53g00001 14 64 C3H Transcription Factor Family AT2G15530 52.941 3.68e-14 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo53g00001 - K10635 gsj:114392181 109.383