Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo52g00015 ATGGAAGGTCGCCGGAGGATAACGCTTTACGATCAAATGACAGCTGGCAACAGTAGCAGCGGCGGCGGCGGCCGAGAGTCATTAGCCAGCCTCATGCTCGACGACGTCGTTTTCAAGAGAACCGAAGCCGAAGCCGAAGCGAGCCGCAGGCTGAGCCGAAGCCGGACTCTCCAAGATATCATCAGCGAAGAAAAACCTAATAATAACAGCAACAACGCGAAGGATCGGAACTCTTGGAAAGCCTTCAAGGAGAAGCTTCGGCTCAAGCGCGCCATCGGCTCGGCTTGGTCCTCCAATATCACTAATCACAGCAATGATGATGATAGGAATAATTTACCTGAAACTCGCCATGACTCGGACGAGTTAACTCAGCAGAACGACGTCGTTGCGGGAGACGCCAACGATTCGGATCCGATCGGGTCTCCGGTGGACAACGCGGCGGCCGGCGGCGACTCCTCCGACGGAGAGAACAACCACGAGGCGGTGGTCGGCGTGTCGCTGATGGATTTGTTGGAGGAGGCGGAGCAGGAAATGGATTTGTATAGAGTGATTGATAATGAAGATGACGGTTATGATGACGTGGAGGAATATAAGAAGAGAGAAGAGGGAGAAGAAGATGAAAAAGAGGGGGGTGTGGAAGAAGAAAAAGGGGGTGCGGTGGAGTACAACTGCTGCGTGTGCATGGTGCGGCACAAAGGCGCGGCGTTTATCCCGTGCGGACACACGTTTTGCAGAATGTGCTCCAGGGAGATTTGGGTGAGCAGAGGGAACTGTCCTCTCTGCAATAATTTAATTTTGGAAATTCTTGATATTTTCTGA 819 0.5263 MEGRRRITLYDQMTAGNSSSGGGGRESLASLMLDDVVFKRTEAEAEASRRLSRSRTLQDIISEEKPNNNSNNAKDRNSWKAFKEKLRLKRAIGSAWSSNITNHSNDDDRNNLPETRHDSDELTQQNDVVAGDANDSDPIGSPVDNAAAGGDSSDGENNHEAVVGVSLMDLLEEAEQEMDLYRVIDNEDDGYDDVEEYKKREEGEEDEKEGGVEEEKGGAVEYNCCVCMVRHKGAAFIPCGHTFCRMCSREIWVSRGNCPLCNNLILEILDIF 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo52g00015 272 SMART ring_2 224 261 IPR001841 -
Pumo52g00015 272 Pfam Zinc finger, C3HC4 type (RING finger) 222 265 - -
Pumo52g00015 272 SUPERFAMILY RING/U-box 223 268 - -
Pumo52g00015 272 CDD RING-HC 224 261 - -
Pumo52g00015 272 MobiDBLite consensus disorder prediction 1 27 - -
Pumo52g00015 272 PANTHER OS01G0917900 PROTEIN 4 272 - -
Pumo52g00015 272 MobiDBLite consensus disorder prediction 44 78 - -
Pumo52g00015 272 MobiDBLite consensus disorder prediction 107 123 - -
Pumo52g00015 272 MobiDBLite consensus disorder prediction 61 76 - -
Pumo52g00015 272 MobiDBLite consensus disorder prediction 11 25 - -
Pumo52g00015 272 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 172 269 IPR013083 -
Pumo52g00015 272 MobiDBLite consensus disorder prediction 98 158 - -
Pumo52g00015 272 MobiDBLite consensus disorder prediction 44 60 - -
Pumo52g00015 272 ProSiteProfiles Zinc finger RING-type profile. 224 262 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo52g00015 4 272 C3H Transcription Factor Family AT3G25030 35.507 2.10e-42 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo52g00015 - - gmx:100819018 379.022