Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo52g00007 ATGGAAGGTTGCCGAAGGATAACGCTTTACGATCAAATGACAGCTGGCAACAGTAGCAGCGGCGGCAGCGGCGGCGGCCGAGAGTCATTAGCCAGCCTCATGCTCGACGACGTCGTTTTCAAGAGGTCCGAAGCCGAAGCCGAAGCGAGCCGCAGGCTGAGCCGAAGCCAGACTCTTCAAGATATCATCAGCGAAGAAAAACCTAATAACAACAACAACGCGAAGGATCGGAACTCTTGGAAAGCCTTCAAGGAGAAGCTTCGGCTCAAGCGCGCCATCGGCTCGGCTTGGAATAATTTACCTGAAACTCGCCCTGACTCGGACGAGTTAACTCAGAAGAACGACGTCGTTGCGGGAGACGCCAACAATTCGGATCCGATCGGGTCTCCGGTGGACAACTCGGCGGCCGGCGGCGACTCCTCCGACGGAGAGAACAACCACGAGGCGGTGGTTGGCATGTCGCTGATGGATTTGTTGGAGGAGGCGGAGCAGGAAATGGATTTGTATAGAGTGATTGATAATGAAGATGACGGTTACGATGACGTGGAGGAATATAAGAAGAGAGAAGAGGGAGAAGAAGATGAAAAAGAGGGGGGTGTGGAAGAAGAAATAGGGGGTGCGGTGGAGTACAACTGCTGCGTGTGCATGGTGCGGCACAAAGGCGCGGCGTTTATCCCGTGCGGACACACGTTCTACAGAATGTGCTCCAGGGAGATTTGGGTGAGCAGAGGGAACTGCCCTCTCTGCAATAATTTAATTTTGGAAATTCTTGATATTTTCTGA 783 0.53 MEGCRRITLYDQMTAGNSSSGGSGGGRESLASLMLDDVVFKRSEAEAEASRRLSRSQTLQDIISEEKPNNNNNAKDRNSWKAFKEKLRLKRAIGSAWNNLPETRPDSDELTQKNDVVAGDANNSDPIGSPVDNSAAGGDSSDGENNHEAVVGMSLMDLLEEAEQEMDLYRVIDNEDDGYDDVEEYKKREEGEEDEKEGGVEEEIGGAVEYNCCVCMVRHKGAAFIPCGHTFYRMCSREIWVSRGNCPLCNNLILEILDIF 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo52g00007 260 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 179 260 IPR013083 -
Pumo52g00007 260 MobiDBLite consensus disorder prediction 126 141 - -
Pumo52g00007 260 CDD RING-HC 212 249 - -
Pumo52g00007 260 SUPERFAMILY RING/U-box 211 256 - -
Pumo52g00007 260 PANTHER OS01G0917900 PROTEIN 26 110 - -
Pumo52g00007 260 Pfam Zinc finger, C3HC4 type (RING finger) 210 253 - -
Pumo52g00007 260 MobiDBLite consensus disorder prediction 117 147 - -
Pumo52g00007 260 ProSiteProfiles Zinc finger RING-type profile. 212 250 IPR001841 -
Pumo52g00007 260 MobiDBLite consensus disorder prediction 52 77 - -
Pumo52g00007 260 MobiDBLite consensus disorder prediction 47 80 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo52g00007 6 260 C3H Transcription Factor Family AT3G25030 35.036 3.18e-41 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo52g00007 - - gmx:100819018 340.117