Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo50g00005 ATGAGAAGCCTTCTTCTCATGTTCGTCCTTACTAAGATTCTGTTTTTCTTTTTCTGCACCTCTATTGCAGATGACTCTATATCCCAATTTCAATCACTTTCTGAAGGAAAGACCTTGGTTTCTGAAGAGGGTACTTTTGAATTGGGTTTCTTCAGTCCAGGAAGTGCTACAGATCGTTACTTGGGAATATGGTACAATTCAATACCAGTGAAGACTGTTGTGTGGGTTGCCAACAGAGCCAACCCTGTCAAAGGCAACTCCAGCATGTTGCATATAAACAGTGAGGGGAATCTTGAGCTTGTTAACCATGATGGGGTTGTGGCTTGGTCAGCAAACTCTAGAAAGAAGGTTCAAAATCCCATTGTGCAACTCTTAAATTCTGGGAATTTGGTAGTGAGAGATGAGAGAGACCAAGATCCTGAAAACTACTTGTGGCAAAGCTTTGATTACCCTTCTGATACACTTTTACCAGGAATGAAGCTGGGTTGGGACTTAAGAACCGGCCTCGAGCGGCGTGTATCGGCTTGGAAGAACTGGGATGATCCGTCACCAGGGGATTTCAGTTGGGGTATCTCTCTTGAAGGTTTTCCTCAAGTGATGATGTGGAAGGGGACAAAGGAGGTTTACCGTGGTGGTCATTGGAATGGTCTTGGATTCAGTGGTGCCCCAGAATTGAAGGCAAATCCAGTTTTTGAGTTCAAGTTTGTTTCCAACGAGAATGAGGTGTACTACACATACAGCCTCAGGAATAGGTCAATGGTTTCAAGGATTGTTATGAACCAAACCATTTCCACTCGCCAAAGGTACATATGGATTGAAGAGGCTCAAACTTGGAGGCTTTATGCATCTGTGCCTAGAGATAACTGTGATTCCTACAATCTTTGTGGACCAAATGGGAATTGTGTAATTGGTGATTCTCCAGTGTGCCAGTGTTTAAGTGGGTTTAGACCGAGATCGCCGGGGAACTGGGACATGATGGACTGGACTCAAGGATGTTTTCTCACTGAAGAATGGAGCTGTGGGGAAAGGAGCAAACATGGGTTTGTCAAATTTAGTGGGTTGAAAGCTCCAGATACTTCACATTCTTGGGTCAATGAGAGTATGAGTCTCATTGAGTGCAGGGATAAATGCTTGGAGAATTGCTCATGTAAAGCTTATGCAAATTCAGATGTTAGAGGAGTAGGAAGTGGTTGTTTGATGTGGTTTGGTGATCTCAGAGATATCAGAGAGTTTTCTGGAGGTGGTCGGGATCTATATATAAGAACTACAATTTCAGAATCAGCTGTGAAAGAAAAACATAGGTTGAGGTTGAAGGTGGTGGCAATAATCCTCATCGTTGCCTCAGTTCTTACAATCATTCTGGTTTTGTACAATGTTGGCAAGAGAATGAAAAAGTTCAGAGCTTGTGAAACAGGTAACAACTTGATGGTAGAGAATAATGAAGATGCGAAAGAAGACCTTGAGCTTCCTTTAGTTGACCTTGCTGCAATTGTCAAAGCAACTGATGGCTTCTCAATTAACAATAAGCTTGGAGAAGGTGGATTTGGGGCCGTATACATGGGTACCCTAGCAGATGGACAAGAAATTGCTGTGAAGAGGCTCTCACAAAGTTCTGGACAAGGGTTTAATGAATTTAAGAATGAAGTCATACTGATTGCCAAACTTCAGCATCGGAACCTAGTTAAGCTTCTTGGTTGTTGCATTGAAGGAGAGGAGAAGATGCTTATCTATGAATACATGCCCAAAAAAAGCCTAGACTCCATTATCTTTGCAGATCATGCAAAAGGAAAAGTTCTAGATTGGCCTAAGCGCTTCAACATTATTTGTGGAATTGGGCGAGGACTTCTATATCTTCATCAAGATTCTAGGTTGAGGATAATACATAGAGACCTTAAAGCAAGTAATGTCCTACTTGACCATGAGTTCAACCCAAAAATATCAGACTTTGGCATGGCTAGAACTTTTGGGGGAGATCAGATTGAAGGAAACACAAGGAGGATAGTTGGAACATATGGTTACATGGCACCTGAATATGCCATCTATGGTCTATTCTCAGTGAAATCCGATGTCTTCAGCTTTGGTGTACTAATGCTGGAGATAGTAAGTGGAAAGAAGAACAGAGGATTTTCCCATTCAAACAACAGCATAAACCTTATTGGACATGCATGGAGATGTTGGAAAGAAAGCAGACCTTTGGACTTGATTGATTCATGCATGGAGAATTCATCTGTTCTATCAGAAGCATTGCGTTGTATCCATATCAGTCTTCTATGTGTCCAACAGCATCCTGAGGATAGGCCAAGTATGTCAACTGTGGTAGTGATGTTGAGTAGTGAGAGTGCCTTGCCTCAACCTAAGGAACCTGCTTTCCTTATGGAGAAGGAGTTCTTTCTTGAAGCAGATTCCTCTACCAAGCACCAGTTTTCTTCCACCAATGATATAAGTGTTACCATGTTAGAGGCTCGGTAG 2469 0.422 MRSLLLMFVLTKILFFFFCTSIADDSISQFQSLSEGKTLVSEEGTFELGFFSPGSATDRYLGIWYNSIPVKTVVWVANRANPVKGNSSMLHINSEGNLELVNHDGVVAWSANSRKKVQNPIVQLLNSGNLVVRDERDQDPENYLWQSFDYPSDTLLPGMKLGWDLRTGLERRVSAWKNWDDPSPGDFSWGISLEGFPQVMMWKGTKEVYRGGHWNGLGFSGAPELKANPVFEFKFVSNENEVYYTYSLRNRSMVSRIVMNQTISTRQRYIWIEEAQTWRLYASVPRDNCDSYNLCGPNGNCVIGDSPVCQCLSGFRPRSPGNWDMMDWTQGCFLTEEWSCGERSKHGFVKFSGLKAPDTSHSWVNESMSLIECRDKCLENCSCKAYANSDVRGVGSGCLMWFGDLRDIREFSGGGRDLYIRTTISESAVKEKHRLRLKVVAIILIVASVLTIILVLYNVGKRMKKFRACETGNNLMVENNEDAKEDLELPLVDLAAIVKATDGFSINNKLGEGGFGAVYMGTLADGQEIAVKRLSQSSGQGFNEFKNEVILIAKLQHRNLVKLLGCCIEGEEKMLIYEYMPKKSLDSIIFADHAKGKVLDWPKRFNIICGIGRGLLYLHQDSRLRIIHRDLKASNVLLDHEFNPKISDFGMARTFGGDQIEGNTRRIVGTYGYMAPEYAIYGLFSVKSDVFSFGVLMLEIVSGKKNRGFSHSNNSINLIGHAWRCWKESRPLDLIDSCMENSSVLSEALRCIHISLLCVQQHPEDRPSMSTVVVMLSSESALPQPKEPAFLMEKEFFLEADSSTKHQFSSTNDISVTMLEAR 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo50g00005 822 Pfam Protein tyrosine and serine/threonine kinase 505 775 IPR001245 GO:0004672|GO:0006468
Pumo50g00005 822 ProSiteProfiles Protein kinase domain profile. 504 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo50g00005 822 SMART ntp_6 343 422 IPR003609 -
Pumo50g00005 822 SUPERFAMILY Protein kinase-like (PK-like) 490 776 IPR011009 -
Pumo50g00005 822 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 148 - -
Pumo50g00005 822 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 469 579 - -
Pumo50g00005 822 CDD B_lectin 31 151 IPR001480 -
Pumo50g00005 822 CDD STKc_IRAK 510 776 - -
Pumo50g00005 822 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 12 767 - -
Pumo50g00005 822 Gene3D Transferase(Phosphotransferase) domain 1 580 787 - -
Pumo50g00005 822 Pfam PAN-like domain 340 408 IPR003609 -
Pumo50g00005 822 ProSitePatterns Protein kinases ATP-binding region signature. 510 532 IPR017441 GO:0005524
Pumo50g00005 822 SMART blect_4 30 151 IPR001480 -
Pumo50g00005 822 Gene3D Phosphorylase Kinase; domain 1 466 579 - -
Pumo50g00005 822 SMART serkin_6 504 757 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo50g00005 822 Pfam S-locus glycoprotein domain 209 318 IPR000858 GO:0048544
Pumo50g00005 822 Pfam D-mannose binding lectin 72 177 IPR001480 -
Pumo50g00005 822 Gene3D - 19 148 IPR036426 -
Pumo50g00005 822 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 182 IPR036426 -
Pumo50g00005 822 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 580 784 - -
Pumo50g00005 822 ProSitePatterns Serine/Threonine protein kinases active-site signature. 626 638 IPR008271 GO:0004672|GO:0006468
Pumo50g00005 822 ProSiteProfiles EGF-like domain profile. 285 321 IPR000742 -
Pumo50g00005 822 ProSiteProfiles PAN/Apple domain profile. 340 423 IPR003609 -
Pumo50g00005 822 ProSiteProfiles Bulb-type lectin domain profile. 24 145 IPR001480 -
Pumo50g00005 822 Pfam Domain of unknown function (DUF3403) 777 822 IPR021820 GO:0004674
Pumo50g00005 822 CDD PAN_AP_plant 339 422 - -
Pumo50g00005 822 PIRSF SRK 1 822 IPR024171 GO:0004674
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo50g00005 439 793 Receptor kinase-like Gene Family AT4G23230 54.775 7.60e-128 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pumo50g00005 PK_Tyr_Ser-Thr 1.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo50g00005 - - cave:132173746 1098.19