Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo50g00002 ATGGAAGGTTTTACCTTGCTTCTGTTCTGCCTTGCCTTGCTGAATAATATAGCAGCCACCACTGTGAGAGAAACTATTAACACATTGCAATCTATCAATGATAGCCAGATCATAGTTTCACCTGGCAAAACCTATGCACTTGGATTCTTCAGTCCTGGCAATTCCAAGAACCGTTATGTGGGAATTTGGTATAATGAGATCCCAACACAGACTGTAGTATGGGTTGCCAACAGAGACAACCCTCTTACAGACTCATCAGGGGTTTTGAAGCTCGATGAAACCGGAGTTCTAGTCCTTCTCAACCATAACAAGAGTGTCATCTGGTCTTCCAACTCATCAAGGTCAGTGCGGTTTCCGGTTGCAAAGCTTTTGGATTCTGGAAATCTCATTGTGCAGGATGGAAACGACAGTAATGAAACAAAAGATTTACTGTGGCAAAGTTTTGATTATCCGGGGGACACAATCTTGCCAGGACAGAAGTTTGGAAGAAATCTAGTTACAGGCCTGAATCGATACATGTCATCATGGAATAGCTCTGATGATCCATCTCAAGGTGAATATAGTTATCAAATTGATATTAGTGGCTATCCACAGTTGGTTTTAAGAGAAGGCACTTTCAAAAGATATCGTTTTGGATCATGGAATGGTATTCAGTTTAGTGGGGCACCTCAGTTGAAACAAAATGCTTTTACTAGATTTAGTTTTATTTCTGATGAGGAAGAGTTGTATTTTAGATTTGAGCTTACCAACAAGTCATTTTTACATAGGATGGTGTTAACAACAGATGGATATATCCTGGGGAATTATTGGAATAATGAAGAAAAAGTTTGGAGCTTGCATGGAAAAATTCCTGTGGATGACTGTGATTACTATGACAAATGTGGAGCCTATGCTAGCTGTAATATAAACAACGTCCCTCCATGTAATTGCTTGGATGGATTTGTACCCAAAACGGATGATATATATGGTGGTTGTGTCAGGAGAACTTCACTTAGTTGTCATGGAGACGGGTTTTTAAAGCTTTCAGGGTTGAAATTACCAGACACAGAGAGATCCTGGTTTAATAGAAGTATTAGCCTTGAAGATTGTAAGATATTGTGCATGAAGAATTGCTCCTGTACAGCTTATGCTGCCTTGGATGTCAGTAAAGGGCCAACTGGGTGTTTACTCTGGTTTGATGATCTGGTTGACATAAGAGGATTGACTGATGTTGATGAAGATATATACATAAGGTTGGCTGGGACAGAAATAGAAGCTATTGAAAGAAAGCAATTACATAAATCCAACATCAGGAAGCCAGAGACTGTTTTCATAAGTAGTGTGTTGTTTATTGCAATTTTAATCCTATGCTTAACCTTCATCATTTATAGACGGTGGAAGACACGGCAGAAAGGCAGAAAGATGAAAGACAGTCTAGAAAGAGATGCAAGTGTAATATATGAGCACGAGAAGGAAGATCTAGAGTTACCCATGTTTGAGTTGTCAACAATTACTTCTGCAACCAATAACTTTTCACCTGACAACAAGCTAGGGGAAGGTGGTTTTGGATCAGTTTATAAGGGCATCCTGGACGATGGAGGAGAAATAGCTGTCAAAAGGCTCTCAAAGAATTCGAGCCAAGGAATTCAAGAGTTCAAAAATGAAGTTCTGCATATTGCAAAGCTTCAGCACAGAAATTTAGTGAGGCTACTAGGGTTCTGCATTCAAGCAGATGAAAGAATGCTTGTTTATGAATTTATGCCCAACAGAAGCTTGGATTCCTTCATATTTGATGAAAACAAGAGCATGTTACTAGATTGGCCAAGGCGCTCACTAATTATCAATGGGGTTGCTCGGGGTCTTCTTTATCTTCATCAAGATTCAAGGCATAGAATAGTTCATAGAGATCTCAAAGCTGGGAATGTTTTGTTAGATAGTGAAATGAACCCAAAGATCTCGGACTTTGGACTGGCTAGAAGCTTTGGAGGAAATGAAATCGAAGCAACCACAAAGCATGTAGTTGGAACCTATGGCTATCTGCCTCCAGAGTATATAATTGATGGAGCTTATTCAACAAAGTCAGATGTTTTCAGCTTTGGTGTGTTGATATTGGAGATAGTGAGTGGGAAGAGAAATAAAGGATTCTGTCATCAAGATAATCTTCTGGCACATGCATGGAGACTATTTACTGAAGGCAAATGCTCTGAAATAGTTGATGCAACAATAATAAACTCACATAATTTATCTGAAGCTCTAAGAACAATTCATGTGGGACTACTATGTGTGCAATTAAGTCCAGACGACAGGCCGAACATGTCATCTGTGGTTCTGATGCTGAGCAGTGAATCTGCACTGCCTCAGCCAAACTTGCCTGGATTCTTTACAAGTACAAGTATGGTTGGCGATAGTTCTTCATCAAGCAGTTATAAACAATACACAAATAATGACATGACAGTTAGCATAATGTCTGCTAGATAG 2457 0.3944 MEGFTLLLFCLALLNNIAATTVRETINTLQSINDSQIIVSPGKTYALGFFSPGNSKNRYVGIWYNEIPTQTVVWVANRDNPLTDSSGVLKLDETGVLVLLNHNKSVIWSSNSSRSVRFPVAKLLDSGNLIVQDGNDSNETKDLLWQSFDYPGDTILPGQKFGRNLVTGLNRYMSSWNSSDDPSQGEYSYQIDISGYPQLVLREGTFKRYRFGSWNGIQFSGAPQLKQNAFTRFSFISDEEELYFRFELTNKSFLHRMVLTTDGYILGNYWNNEEKVWSLHGKIPVDDCDYYDKCGAYASCNINNVPPCNCLDGFVPKTDDIYGGCVRRTSLSCHGDGFLKLSGLKLPDTERSWFNRSISLEDCKILCMKNCSCTAYAALDVSKGPTGCLLWFDDLVDIRGLTDVDEDIYIRLAGTEIEAIERKQLHKSNIRKPETVFISSVLFIAILILCLTFIIYRRWKTRQKGRKMKDSLERDASVIYEHEKEDLELPMFELSTITSATNNFSPDNKLGEGGFGSVYKGILDDGGEIAVKRLSKNSSQGIQEFKNEVLHIAKLQHRNLVRLLGFCIQADERMLVYEFMPNRSLDSFIFDENKSMLLDWPRRSLIINGVARGLLYLHQDSRHRIVHRDLKAGNVLLDSEMNPKISDFGLARSFGGNEIEATTKHVVGTYGYLPPEYIIDGAYSTKSDVFSFGVLILEIVSGKRNKGFCHQDNLLAHAWRLFTEGKCSEIVDATIINSHNLSEALRTIHVGLLCVQLSPDDRPNMSSVVLMLSSESALPQPNLPGFFTSTSMVGDSSSSSSYKQYTNNDMTVSIMSAR 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo50g00002 818 SMART serkin_6 504 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo50g00002 818 Gene3D Phosphorylase Kinase; domain 1 478 579 - -
Pumo50g00002 818 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 8 763 - -
Pumo50g00002 818 CDD PAN_AP_plant 329 413 - -
Pumo50g00002 818 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 182 IPR036426 -
Pumo50g00002 818 Gene3D Hepatocyte Growth Factor 331 410 - -
Pumo50g00002 818 ProSiteProfiles PAN/Apple domain profile. 333 413 IPR003609 -
Pumo50g00002 818 ProSiteProfiles Protein kinase domain profile. 504 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo50g00002 818 Pfam Domain of unknown function (DUF3403) 773 818 IPR021820 GO:0004674
Pumo50g00002 818 Pfam D-mannose binding lectin 71 176 IPR001480 -
Pumo50g00002 818 ProSiteProfiles Bulb-type lectin domain profile. 23 144 IPR001480 -
Pumo50g00002 818 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 580 780 - -
Pumo50g00002 818 CDD B_lectin 30 151 IPR001480 -
Pumo50g00002 818 SUPERFAMILY Protein kinase-like (PK-like) 488 772 IPR011009 -
Pumo50g00002 818 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 468 579 - -
Pumo50g00002 818 Pfam Protein kinase domain 507 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo50g00002 818 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 18 148 - -
Pumo50g00002 818 ProSitePatterns Serine/Threonine protein kinases active-site signature. 625 637 IPR008271 GO:0004672|GO:0006468
Pumo50g00002 818 Gene3D - 18 148 IPR036426 -
Pumo50g00002 818 SMART blect_4 29 151 IPR001480 -
Pumo50g00002 818 PIRSF SRK 2 818 IPR024171 GO:0004674
Pumo50g00002 818 Pfam PAN-like domain 333 398 IPR003609 -
Pumo50g00002 818 Gene3D Transferase(Phosphotransferase) domain 1 580 780 - -
Pumo50g00002 818 Pfam S-locus glycoprotein domain 209 317 IPR000858 GO:0048544
Pumo50g00002 818 SMART ntp_6 333 412 IPR003609 -
Pumo50g00002 818 CDD STKc_IRAK 510 772 - -
Pumo50g00002 818 ProSitePatterns Protein kinases ATP-binding region signature. 510 532 IPR017441 GO:0005524
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo50g00002 436 806 Receptor kinase-like Gene Family AT4G23190 50.000 3.19e-120 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pumo50g00002 Pkinase 4.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo50g00002 - - gmx:100795006 1516.52