Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo50g00001 ATGTTGCGTGTGAGTCCGAATGAGGCAGTGGTGGTGAACTCCATCTTGCAGTTGCACTGGCTCTTCAACCTGACGGGTTTCACCGTCGAAAATGTTCTTCGTTGGATTTGGAGTTTGAACCCAAAGATCGTGACGATTATGAAGCATAAAGTTGCCTATGAAATATCCAAACTTGCACTTAGAGACCTTTGTTCAACTTTGCGATACGGTGCTATTGACACTGCTAGTGCTAGAGGACTGCTAAGACCACAACATTGGGAGATCGAATCAGCTCATGCAGATGGAGTGCTTCAGCTTTTGTGCCTCAGAGAAATTGATGCAAATGTAATAAATGAGAACGAGAGGGAAGATATAGAGTTACCTATGTTTGATTTGTCTACAATTAGTTCTGCAACCAATAACTTTTCAGCTGACAACAAACTAGGGGAAGGTGGTTTTGGATCAGTTTATATGAGCATCCTGGATGATGGAAGAGAAATAGCTGTCAAGAGGCTCTCAAAAAATTCAAGCCAAGGACTTCAGGAGTTAAAAAATGAAGTTATGCATATTGCAAAACTTCAGCACAGGAATTTAGTGAGGCTACTAGGGTACTGCATTCAAGCAAGAGAAAGATTGCTTGTTTATGAATTTATGGCCAACAAAGGCTTGGATTCCTTCATATTTGATGAAAAGAAGTGCATGTTACTAGATTGGCCAAGGCGCTTGGTCATTATCAACGGGATTGCTCGGGGTCTTCTTTATCTTCATCAAGATTCAAGGCATAGAATAGTTCATAGGGATCTCAAAGCTGGAAATGTTTTGTTAGATAGTCAAATGAACCCAAAAATCTCAGACTTTGGACTGGCTAGAAGCTTTGGAGGAAATGAAACTGGAGCAAACACAAATCATGTAGTTGGCACCTATGGCTATATGCCGCCAGAGTATATAATTGATGGAGCTTATTCAACAAAGTCGGATGTTTTCAGCTTTGGTGTGTTGATATTGGAGATAGTGAGTGGAAAGAGAAATAGAGGCTTCTGTCATGAAGATAATCTGCTGGGGCATGCATGGAGACTATTTACTGACGGCATATGCAGTGAAATAGTTGATGCAACAATAAGAGACTCACTCAATTTATCTGCAGCTTTAAGATCAATTCATGTGGGCATACTTTGTGTGCAACTAAGTCGAGATGATCGGCCAAACATGTCATCAGTGGTTCTGATGATGAGCACTGATTCTGCACTGCCTCGGTCAAAATTACCTGGATTCTTCACTAATAGAAATCCGGCTGAGGACAGTTCTTCATCAAGCAGTTATAAACAATGCTCAAATAATGAAATGACAGTTAGCATATTGTCTGCTAGATAG 1350 0.4067 MLRVSPNEAVVVNSILQLHWLFNLTGFTVENVLRWIWSLNPKIVTIMKHKVAYEISKLALRDLCSTLRYGAIDTASARGLLRPQHWEIESAHADGVLQLLCLREIDANVINENEREDIELPMFDLSTISSATNNFSADNKLGEGGFGSVYMSILDDGREIAVKRLSKNSSQGLQELKNEVMHIAKLQHRNLVRLLGYCIQARERLLVYEFMANKGLDSFIFDEKKCMLLDWPRRLVIINGIARGLLYLHQDSRHRIVHRDLKAGNVLLDSQMNPKISDFGLARSFGGNETGANTNHVVGTYGYMPPEYIIDGAYSTKSDVFSFGVLILEIVSGKRNRGFCHEDNLLGHAWRLFTDGICSEIVDATIRDSLNLSAALRSIHVGILCVQLSRDDRPNMSSVVLMMSTDSALPRSKLPGFFTNRNPAEDSSSSSSYKQCSNNEMTVSILSAR 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo50g00001 449 SMART serkin_6 135 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo50g00001 449 Pfam Domain of unknown function (DUF3403) 404 449 IPR021820 GO:0004674
Pumo50g00001 449 SUPERFAMILY Protein kinase-like (PK-like) 118 431 IPR011009 -
Pumo50g00001 449 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 102 210 - -
Pumo50g00001 449 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 211 411 - -
Pumo50g00001 449 Gene3D Phosphorylase Kinase; domain 1 109 210 - -
Pumo50g00001 449 ProSiteProfiles Protein kinase domain profile. 135 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo50g00001 449 ProSitePatterns Protein kinases ATP-binding region signature. 141 163 IPR017441 GO:0005524
Pumo50g00001 449 CDD STKc_IRAK 141 403 - -
Pumo50g00001 449 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672|GO:0006468
Pumo50g00001 449 Gene3D Transferase(Phosphotransferase) domain 1 211 412 - -
Pumo50g00001 449 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 112 449 - -
Pumo50g00001 449 Pfam GRAS domain family 1 68 IPR005202 -
Pumo50g00001 449 Pfam Protein kinase domain 137 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo50g00001 123 449 Receptor kinase-like Gene Family AT4G23290 52.059 4.31e-116 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pumo50g00001 Pkinase 9.5e-46 CL0016
TF GRAS Pumo50g00001 Pkinase 9.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo50g00001 - - gmx:100795006 573.933