Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04419 ATGCCAGCGGCCTACGGAGCTCGCTTGACCACCTTCGAAGACTCCGAGAAGGAGAGTGAATACGGTTACGTTCGTAAGGTTTCAGGACCAGTTGTGGTTGCTGATGGCATGGCTGGGGCAGCTATGTATGAACTCGTACGTGTTGGTCGTGATAATCTCATTGGGGAAATTATTCGTTTGGAAGGGGATTCGGCTACTATCCAAGTTTATGAGGAAACCGCTGGTCTAATGGTTAATGACCCTGTCTTGCGTACACACAAGCCTTTGTCTGTGGAGTTGGGCCCTGGAATACTGGGGAATATTTTTGATGGCATTCAGAGGCCATTGAAAACTATTGCTAAAAGATCTGGTGATGTCTATATGCCTCGTGGTGTATCTGTTCCAGCACTTGACAAAGATACACTATGGGAGTTTCAGCCTAAAAAAATTGGTGAAGGAGACCTATTGACTGGTCACTGGTGGAGATCTACTGTTTTTGAGAACAGTCTAATGCAACACCATATAGCTCTTCCTCCTGACGCTATGGGAAAAATTACTTACATTGCACCACCTGGTCAATATTCCTTGAAGGACACTGTGTTGGAGCTTGAGTTTCAAGGTGTCAAAAAAAAAAAAATTACCATGCTTCAGACTTGGCCTGTACGAACCCCACGGCCTGTTGCATCAAAACTTGTAGCTGATACTCCTCTTCTTACTGGTCAGCGTGTACTTGATGCTCTTTTCCCCTCAGTTCTTGGTGGGACTTGTGCCATACCTGGAGCTTTTGGTTGTGGTAAAACTGTCATTAGTCAGGCCCTTTCTAAGTATTCAAACTCAGACGCTGTTGTTTATGTTGGCTGTGGGGAACGTGGAAATGAAATGGCAGAGGTTCTAATGGACTTTCCACAACTTACAATGACATTGCCTGATGGTCGTGAAGAATCTGTCATGAAGCGTACAACACTAGTATCTAACACTTCAAACATGCCAGTGGCTGCTTGTGAAGCTTCAATTTATACAGGAATCACTTTAGCTGAGTATTTTAGAGACATGGGTTACAATGTCAGCATGATGGCAGATTCAATATCTAGATGGGCAGAAGCACTACGTGAAATCTCTGGGCGGCTGGCAGAAATGCCTGCAGATAGTGGATATCCTGCGTACCTTGCTGCACGTTTAGCCTCTTTCTATGAACGTGCTGGCAAAGTAAAATGTCTTGGAGGTCCTGAACGTGCTGGTAGTGTCACAATTGTTGGTGCTGTTTCTCCACCTGGAGGAGATTTTTCAGATCCCGTGACTTCTGCAACCCTCAGCATAGTTCAGGTTTTCTGGGGTTTGGACAAAAAGCTCGCTCAGAGGAAGCATTTTCCTTCTGTGAACTGGCTGATTTCTTATTCGAAATACTCAACGGCATTGGAATCATTTTATGAGCAATTTGATCCAGATTTTATAAACATTAGGACAAAGGCCCGTGAAGTGCTGCAAAGAGAAGATGACCTGAATGAAATTGTCCAGCTTGTAGGTAAGGATGCCCTAGCTGAAGCAGACAAAATCACTTTAGAAACTGCAAAACTATTAAGAGAGGATTATCTTGCACAAAATGCTTTTACACCGTCCCAGAAATTTGAGGATCCAGCAGAAGGTGAAGCTGCTTTGGTTACCAAATTTAAGAAGCTACATGAGGACCTGACTAATGGTTTCCGCAACCTTGAGGATGAAACTCGATGA 1707 0.4417 MPAAYGARLTTFEDSEKESEYGYVRKVSGPVVVADGMAGAAMYELVRVGRDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAKRSGDVYMPRGVSVPALDKDTLWEFQPKKIGEGDLLTGHWWRSTVFENSLMQHHIALPPDAMGKITYIAPPGQYSLKDTVLELEFQGVKKKKITMLQTWPVRTPRPVASKLVADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDAVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVSNTSNMPVAACEASIYTGITLAEYFRDMGYNVSMMADSISRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERAGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEADKITLETAKLLREDYLAQNAFTPSQKFEDPAEGEAALVTKFKKLHEDLTNGFRNLEDETR 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04419 568 Pfam ATP synthase alpha/beta family, beta-barrel domain 25 85 IPR004100 GO:0046034|GO:1902600
Pumo4g04419 568 NCBIfam V-type ATPase subunit A 20 531 IPR005725 GO:0016887|GO:0033180|GO:0046961|GO:1902600
Pumo4g04419 568 CDD ATP-synt_V_A-type_alpha_N 21 87 - -
Pumo4g04419 568 Gene3D - 91 458 IPR027417 -
Pumo4g04419 568 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 17 89 IPR036121 GO:0046034|GO:1902600
Pumo4g04419 568 ProSitePatterns ATP synthase alpha and beta subunits signature. 450 459 IPR020003 GO:0005524
Pumo4g04419 568 CDD V_A-ATPase_A 88 461 - -
Pumo4g04419 568 FunFam V-type proton ATPase catalytic subunit A 134 205 - -
Pumo4g04419 568 PANTHER V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A 10 531 IPR022878 GO:0046034|GO:0046961
Pumo4g04419 568 Pfam ATPsynthase alpha/beta subunit N-term extension 102 224 IPR031686 -
Pumo4g04419 568 Gene3D - 134 206 - -
Pumo4g04419 568 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 203 463 IPR027417 -
Pumo4g04419 568 CDD ATP-synt_V_A-type_alpha_C 476 531 - -
Pumo4g04419 568 Gene3D - 460 562 IPR024034 -
Pumo4g04419 568 Gene3D - 20 89 IPR023366 -
Pumo4g04419 568 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 233 459 IPR000194 GO:0005524
Pumo4g04419 568 FunFam V-type proton ATPase catalytic subunit A 20 89 - -
Pumo4g04419 568 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 472 550 - -
Pumo4g04419 568 Hamap V-type ATP synthase alpha chain [atpA]. 19 567 IPR022878 GO:0046034|GO:0046961
Pumo4g04419 568 FunFam V-type proton ATPase catalytic subunit A 191 458 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04419 1 568 Primary Pumps ATPases(2) AT1G78900 83.333 0.0 1031
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04419 K02145 - gmx:100775727 1009.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g04419 4 85221925 85226997 Pumo4g04419 4 85221925 85226997 ECH