Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04415 ATGCAATTAGCGTCAAATGGTGACAAGGAAGAATGTTCAGAAAGCGAACCCATCTTGAATCAGCACCAACTTCATTTGCAACCATCCGGAGAATCCTCCTTTTCCTGTGAAATTATTCCTATTCCTGCTGCTTCCAACGATGATGTCGATGATGATTTACAAAACGTTCGGGTTGATGAGACTTGTCATCTCGTAAATGCAGATCAGCCACAATGCCGAATATGCCTCGATATTGGAGGAGAAGATTTAATTGCCCCATGCCATTGTAAAGGTACGCAAAAGTACGTCCACAGATCATGTCTTGATAATTGGAGATCCACCAAGGAGGGCTTCGCTTTTTCTCACTGTACAGAGTGCAGAGCTGTCTTCATATTACGTGCAAATGTCCCACCAGATCGGTGGTGGTTGAGATTAAAATTTCAGTTCCTTGTTGCTAGAGATCATGCATTCATTTTCATAATTGTTCAGCTGGTTGTTGCTTTCTTGGGAGTGCTTGTGTACAAATTTTATGGAGATGAACTGAGGGAAATGTTTGGTTATGAAGAACATCCATATGGATTTTATACAATGGCTGTTCTAGCCATTGTTTTGGTGGGTTTGCTCTATGGCTTCTTCATAGCGATAATATGTGGCCAAAGAATCAACGAACGCCACTACCATGTTCTTGCCAAACAAGAATTGACTAAGGAATATGTGGTAGAAGATCGAGATCATGTAAAGAATGTGCCTGAACTTGATCCCAGCCATGTGACAGAGCTAAGGATGTTGGGCCTTTACTAG 780 0.4179 MQLASNGDKEECSESEPILNQHQLHLQPSGESSFSCEIIPIPAASNDDVDDDLQNVRVDETCHLVNADQPQCRICLDIGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVFILRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLVVAFLGVLVYKFYGDELREMFGYEEHPYGFYTMAVLAIVLVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYVVEDRDHVKNVPELDPSHVTELRMLGLY 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04415 259 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 124 IPR013083 -
Pumo4g04415 259 ProSiteProfiles Zinc finger RING-CH-type profile. 64 126 IPR011016 GO:0008270
Pumo4g04415 259 CDD RING_CH-C4HC3_MARCH 72 120 - -
Pumo4g04415 259 SMART ringv_2 71 120 IPR011016 GO:0008270
Pumo4g04415 259 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 192 259 - -
Pumo4g04415 259 Pfam RING-variant domain 72 119 IPR011016 GO:0008270
Pumo4g04415 259 SUPERFAMILY RING/U-box 67 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04415 Pumo-Chr4 85189178 85194918 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04415 31 218 C3H Transcription Factor Family AT1G50440 67.358 1.14e-88 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04415 - - gmx:100789593 515.383