Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04409 ATGGCAGTTGAAGGTGGAAAGGAATTGATTTTCAGGTCGAAGCTTCCCGATATCTACATCCCCAAACACCTTCCCCTCCACTCTTACTGCTTTGAGAATTTGCGCGAGTACGGTTCACGCCCCTGCTTGATCAATGCCCCGACGGGAGCCGTCTACACCTACGAGGATGTGGACGGCACCGCCCGAAAAGTGGCGTGGGGGCTGAACAAACTGGGCGTGGAACAGGGCGAGGTGATCATGATCCTCCTCCCGAATTGCCCCGAATTCGTGTTCTCGTTTCTTGGCGCGTCTTATCGAGGTGCCATGGCCACTGCCGCCAACCCTTTCTTCACCCCGGCGGAGATTGCAAAGCAAGCCAAGGCCTCGAATGCGAAGGTGCTGATCACGCAGGCCTCTTACTACGAGAAAGTGAAGGAGCTGGACGTGAAGCTGGTGTTCGTGGACTCTTGTCCGCCCGAGACAGAGGAGCATCAGCATCTGCATTTCTCACAGCTGTGTGAGTTTGAGGATAGCAGCAGCGACATAGGCGAGTTTGAGGATATCAAGCCGGATGACGTGGTTGCATTGCCGTATTCTTCTGGAACAACGGGGCTTCCTAAAGGGGTGATGCTGACACACAAGGGATTGGTGACGAGCATTGCTCAGCAGGTGGACGGTGAGAACCCCAACCTCTATTACCACTGCGACGACACCATCCTGTGCGTCCTTCCCCTGTTCCACATTTACTCTCTCAACTCTGTTTTGCTCTGCGGCTTGCGGGCCAAGGCTACCATTCTCCTCATGCCTAAGTTCGAAATTAACTCCTTGCTGGCTCTCATTCACAAGCACAAAGTCACAATTGCCCCTGTTGTCCCTCCCATTGTTCTCGCCATTGCCAAGTCACCAGATCTCAATAACTATGACCTCTCTTCCATCAGAGTCTTGAAGTCCGGGGGAGCCCCTCTCGGGAAAGAACTCGAAGACACTCTCAGGGCAAAATTCCCCAACTCCAAACTTGGCCAGGGATACGGAATGACTGAGGCAGGGCCTGTGCTAACAATGTCTTTAGCTTTTGCTAAAGAACCGATAGATGTAAAACCAGGTGCATGTGGAACCGTTGTAAGAAATGCAGAGATGAAGATTGTGGATCCTGAAACCGGTAATTCTTTACCTCGAAACCAGTCCGGTGAAATTTGCATAAGAGGCGACCAGATTATGAAAGGTTATCTAAATGATGGAGAGGCTACTGAGAGAACCATAGACAAAGATGGTTGGTTGCACACAGGTGACATCGGGTACATCGATGATGACGATGAGTTATTCATCGTTGATAGGCTCAAGGAATTGATCAAATACAAGGGATTTCAAGTGGCTCCAGCTGAACTTGAAGCCCTTCTTCTCACTCATCCTAAGATCTCTGATGCTGCTGTCGTTCCAATGAAGGATGAAGCCGCGGGAGAAGTACCTGTTGCATTTGTGGTGAGATCAAATGGTTATACCGACACAACCGAGGATGAAATTAAGCACTTTATCTCCAAACAGGTGGTGTTTTACAAAAGAATAAACCAAGTATTCTTCATTGATGCAATTCCCAAGTCACCGTCAGGCAAAATCTTGCGTAAGGATCTAAGAGCAAAGCTAGCAGCACCTGTTTCAAAATGA 1641 0.496 MAVEGGKELIFRSKLPDIYIPKHLPLHSYCFENLREYGSRPCLINAPTGAVYTYEDVDGTARKVAWGLNKLGVEQGEVIMILLPNCPEFVFSFLGASYRGAMATAANPFFTPAEIAKQAKASNAKVLITQASYYEKVKELDVKLVFVDSCPPETEEHQHLHFSQLCEFEDSSSDIGEFEDIKPDDVVALPYSSGTTGLPKGVMLTHKGLVTSIAQQVDGENPNLYYHCDDTILCVLPLFHIYSLNSVLLCGLRAKATILLMPKFEINSLLALIHKHKVTIAPVVPPIVLAIAKSPDLNNYDLSSIRVLKSGGAPLGKELEDTLRAKFPNSKLGQGYGMTEAGPVLTMSLAFAKEPIDVKPGACGTVVRNAEMKIVDPETGNSLPRNQSGEICIRGDQIMKGYLNDGEATERTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLLTHPKISDAAVVPMKDEAAGEVPVAFVVRSNGYTDTTEDEIKHFISKQVVFYKRINQVFFIDAIPKSPSGKILRKDLRAKLAAPVSK 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04409 546 Pfam AMP-binding enzyme 32 445 IPR000873 -
Pumo4g04409 546 ProSitePatterns Putative AMP-binding domain signature. 189 200 IPR020845 -
Pumo4g04409 546 Gene3D - 8 440 IPR042099 -
Pumo4g04409 546 FunFam Long-chain-fatty-acid--CoA ligase FadD 12 440 - -
Pumo4g04409 546 Gene3D - 441 543 IPR045851 -
Pumo4g04409 546 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 8 538 - -
Pumo4g04409 546 CDD 4CL 20 536 - -
Pumo4g04409 546 FunFam 4-coumarate--CoA ligase 2 441 543 - -
Pumo4g04409 546 Pfam AMP-binding enzyme C-terminal domain 454 530 IPR025110 -
Pumo4g04409 546 SUPERFAMILY Acetyl-CoA synthetase-like 16 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04409 Pumo-Chr4 85111796 85115569 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04409 5 508 Monolignol Biosynthesis Gene Families AT1G51680 70.472 0.0 714
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04409 K01904 - gmx:547944 983.4