Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04408 ATGGAGTCAACAACTGCAGTAGTGTTGCTGATCTTTGTTTCAGTGAGCTGTGAGGGTACTATTATCGTATCCAAGGATGGGAGTGGAGATTATAGAACGGTGGGTGAAGCCATTATGAATGCTCCGGAAATGAGTGACAAACCTTACACCATTCACGTTCGAGCAGGTACTTATCAAGAGTACGTAATCATTCCTGCTAAAAAGACTAATATTAAGCTCCTTGGAGATGGACCTCACCACACCAAATTAGTAGGCTACCAAAATGGTTCCACCATAGACATCCGTGGAGATGGATTCATGGCAGAAAAGATGGGATTTGCGAACTGGGCAGGGCTAAAGGCAAGCGCTGCAGTGGCGGTTCGGAACGAGGCAAACAGGAGCATATTCTTCGAATGCTCGATCGAAGGACTCCAAGACACACTGTGGGCGGTTTCGGGGCGTCAGTTCTACAAAAACTGCGACATCTACGGCACCGTTGACTTCATCTACGGCAATGCAGCCGCAGTGTTCCAGGACTGCATGCTCTACGCGCGTTACCGTGAGTACGTGACGTTCACCGCTCAGTCGCGAGAGGATCCAAAGGAGAAGACCGGCTTCACTTTCCAAAGATGCAAATTCACAATGTCCCCAGAGGATTCCCTGTCCCACAGAAATTCAGAGGTGCGTGCCACGTTGGGGCGTCCCTTGAGAGCCTATTCCACAGTGGCCATCTTCCACTCTTACATTGACTCCATCGTGGATCCTAAAGGTTGGGAGCCCATGCCACACCAGCCCACTGACAAACTCACCTACATCGAGTTTCAGAATGTTGGGCCGGGCTCTAACACTGATGCCAGAGTTCAGTGGCCTGGTGTTACAGTCCTTCGACACCCAACACAAGCAGCCCCTTTCACTGCTTCTTATCTCTTAGATGCTGACTCTTGGATTCCCTCAACGGGCGTTCCCTACGACTAA 954 0.5031 MESTTAVVLLIFVSVSCEGTIIVSKDGSGDYRTVGEAIMNAPEMSDKPYTIHVRAGTYQEYVIIPAKKTNIKLLGDGPHHTKLVGYQNGSTIDIRGDGFMAEKMGFANWAGLKASAAVAVRNEANRSIFFECSIEGLQDTLWAVSGRQFYKNCDIYGTVDFIYGNAAAVFQDCMLYARYREYVTFTAQSREDPKEKTGFTFQRCKFTMSPEDSLSHRNSEVRATLGRPLRAYSTVAIFHSYIDSIVDPKGWEPMPHQPTDKLTYIEFQNVGPGSNTDARVQWPGVTVLRHPTQAAPFTASYLLDADSWIPSTGVPYD 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04408 317 PANTHER PECTINESTERASE 21 310 - -
Pumo4g04408 317 FunFam Pectinesterase 18 314 - -
Pumo4g04408 317 Gene3D - 14 317 IPR012334 -
Pumo4g04408 317 Pfam Pectinesterase 21 305 IPR000070 GO:0030599|GO:0042545
Pumo4g04408 317 SUPERFAMILY Pectin lyase-like 19 316 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04408 Pumo-Chr4 85106610 85108843 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04408 18 317 Carbohydrate Esterase AT5G04960 39.297 2.64e-75 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04408 K01051 - gmx:102665195 544.273