Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04405 ATGAAGCTCACCGTGAAGACCTTGAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCCTCAGACACTATTATGGCTGTCAAGAAGAATATTGAAGATGTACAAGGCAAAGATAATTACCCATGTGGACAGCAATTGCTCATTCACAATGGCAAGGTTTTGAAAGATGAAACTACATTAGCAGACAATAAGGTCTCTCAGGATGGCTTTCTTGTTGTCATGCTTAGTAAGAGTAAAACCGTAGGATCTGCTGGCACTTCATCAACTCAGCCTGCTAGCAACCCACCTATAACTGTATCAACACCAAATTCCACGTCTCTAGTACAAACTCAATCTGCAAACAACAATGCATCTGCCACAGATGTCACAACTACAAATGTGACTACAGATACTTATGGTCAGGCTGCTTCAAATTTAGTTGCTGGTAGTAATCTTGAGCAGACTATTCAGCAAATTATGGACATGGGAGGTGGCAAGTTGGGACAGAGATACAGTTAG 495 0.4202 MKLTVKTLKGSHFEIRVQPSDTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSQDGFLVVMLSKSKTVGSAGTSSTQPASNPPITVSTPNSTSLVQTQSANNNASATDVTTTNVTTDTYGQAASNLVAGSNLEQTIQQIMDMGGGKLGQRYS 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04405 164 MobiDBLite consensus disorder prediction 80 103 - -
Pumo4g04405 164 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Pumo4g04405 164 Gene3D - 1 80 - -
Pumo4g04405 164 CDD Ubl_Rad23 1 74 - -
Pumo4g04405 164 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 158 - -
Pumo4g04405 164 FunFam UV excision repair protein RAD23 1 80 - -
Pumo4g04405 164 SUPERFAMILY Ubiquitin-like 1 86 IPR029071 -
Pumo4g04405 164 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Pumo4g04405 164 SMART ubq_7 1 75 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04405 Pumo-Chr4 85076143 85079736 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04405 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 41.892 8.13e-08 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04405 K10839 - gmx:100804038 263.462