Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04402 ATGGCAACGATGAAGAAGATGAATGAGTGGTCAACAACAACACGCAGTTACAGTTCTCTCTACTTCAATCCCCTCAACGACCTCAGGCACTGCCGTAGCTGCAACGACCACCACACCTTTCACTTTGACTTTGAAGAAGAAGACAAGGAGAACTCCAACTCCAACTCCAACTCCAACGCCAATGCCAATGGATCCTCTGTTCTGGCCAAGCCCAAGCCCAAGCCCAAGCCCTTCAGGTCGCTTGAATTTTGCATGCAAATGAACGACCTTCACTCTCTCAACATTTGGGATTACTCTGATTCCGAGTCAGCTCCAGCTTCTTCCTGGTCCACACTGCCCAACAAGTCCTTGATCTGTAGACCCTTGCCTTTAGATATTGGAAGCTGCACATGTTTTATCGTCAAGGACAAGGAACCACCGCCGCAGGGACTATCAGGGGCCACTTTCTTCTCTCTCTATACCAATGAAGGTCAGGGACGGCAGAATAGGAAACTGGCTGTGGCCCACCATAAGCGGCGGAATGGGAGGTCTCACTTCACCATAGCTCAGAATGTTAAAGGACTACTCTCCCATTCGGATGATACTTTTCTTGGCACCGTAACAGCTAACCTCATCGGCTCAAAATACCACATTTGGGATCAGGGATATCGTCATAATTCCCCTAGTCCTACTAAACCATCAAAGCTACCTCTTGCTGTTGTCACCTATATACCTACAGTAACAACGTGTACAGGAACTCACAGAAGCATGAGGGCATATATACCCAAGCATCAATCTATGCCACTCAAGAACACAACCCAGGTACAACATATAAAAGGATTGCCAATGAATTGGGAGGGAAAACTCGACAAAGTCCATCAATTATTCTCGAAGGTTCCACTTTACAACAAGATTTCAAAGCAATATGAGCTTGACTTTAGAGATAAAGGAAAGGCAGGATTTAGAATCCAAAGATCAGTAAAAAATTTCCAGCTGACTTTAGAGGAGAATGGGAGGCAGACGATCCTGCAGCTAGGGAGGGTGGGAAAATCAAAATTCGTTATGGACTACAGGTATCCTTTGACAGGTTACCAGGCGTTTTGCATATGTTTGGCTTCCATGGATTCAAAGCTTTGTTGCACAGTTTAG 1128 0.4574 MATMKKMNEWSTTTRSYSSLYFNPLNDLRHCRSCNDHHTFHFDFEEEDKENSNSNSNSNANANGSSVLAKPKPKPKPFRSLEFCMQMNDLHSLNIWDYSDSESAPASSWSTLPNKSLICRPLPLDIGSCTCFIVKDKEPPPQGLSGATFFSLYTNEGQGRQNRKLAVAHHKRRNGRSHFTIAQNVKGLLSHSDDTFLGTVTANLIGSKYHIWDQGYRHNSPSPTKPSKLPLAVVTYIPTVTTCTGTHRSMRAYIPKHQSMPLKNTTQVQHIKGLPMNWEGKLDKVHQLFSKVPLYNKISKQYELDFRDKGKAGFRIQRSVKNFQLTLEENGRQTILQLGRVGKSKFVMDYRYPLTGYQAFCICLASMDSKLCCTV 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04402 375 MobiDBLite consensus disorder prediction 48 74 - -
Pumo4g04402 375 Pfam Tub family 120 369 IPR000007 -
Pumo4g04402 375 SUPERFAMILY Tubby C-terminal domain-like 106 374 IPR025659 -
Pumo4g04402 375 PANTHER TUBBY-RELATED 58 372 - -
Pumo4g04402 375 Gene3D Tubby Protein; Chain A 110 374 IPR025659 -
Pumo4g04402 375 PRINTS Tubby superfamily signature 331 350 IPR000007 -
Pumo4g04402 375 PRINTS Tubby superfamily signature 352 374 IPR000007 -
Pumo4g04402 375 PRINTS Tubby superfamily signature 196 220 IPR000007 -
Pumo4g04402 375 PRINTS Tubby superfamily signature 311 327 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04402 Pumo-Chr4 85058133 85060499 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04402 92 268 TUB Transcription Factor Family AT1G16070 58.192 2.05e-70 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pumo4g04402 Tub 2.2e-45 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04402 K19600 - gmx:100803500 545.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g04402 4 85058133 85060499 Pumo4g04402 4 85058133 85060499 ECH