Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04401 ATGGCTAAGTCGACGTCACAGGAAAACCTCACTAGTGCCGCTACAACCCCCACCAAGCCCAAGCTGAAGAGGCCACGCAAGACAATCCCGAGAGACAGCCCTTCACAACGAAGCTCAATCTACCGGGGCGTTACAAGGCATCGATGGACAGGTCGATACGAGGCTCATTTGTGGGATAAGACTTGCTGGAATGAATCGCAGAACAAGAAAGGAAGACAAGTATATCTCGGGGCTTATGACGATGAAGATGCGGCAGCACGTGCCTATGACTTGGCAGCATTGAAGTACTGGGGCCAAGACACCATCCTCAATTTTCCACTATCAAATTATCAAGACGACCTTAAGGAGATGGAGGATCAATCTAAGGAAGAATATATTGGATCCTTAAGAAGAAAAAGTAGCGGCTTCTCTCGAGGAGTCTCAAAATATAGAGGTGTCGCAAGACATCATCACAATGGAAGATGGGAAGCTCGAATTGGCAGAGTCTTCGGCAATAAATATCTATACCTTGGAACTTACGGTACAGAAGAAGAAGCAGCAATGGCGTACGATATGGCAGCCATAGAGTACCGTGGTCTTAATGCGCCCAAGACTGAAGACGAAGACAGCCATGAAACTGGTGGTCTTCTCAACCGTGAAGTTGAAGTTGAAGCTGAAGCCCACCATGTGAGCCCAATCACAACAAGTACACCACCATCTGGATCTTCTTCAGCTGTGGATTGCCCTCCACCACCTTCAAACCCTCCTCCTCCTCCTCCTCCTCGTTCATTCCCTGAAGATATTCAAACTTTTTTCGAAAGTCAAGATTCTGGAATCTACATAGACACTGATGACATTATATTTGGCGACTTGACCTCCATTGCTTCACCAATTTTTCATTATGAGCTTAATGCTTAA 897 0.4638 MAKSTSQENLTSAATTPTKPKLKRPRKTIPRDSPSQRSSIYRGVTRHRWTGRYEAHLWDKTCWNESQNKKGRQVYLGAYDDEDAAARAYDLAALKYWGQDTILNFPLSNYQDDLKEMEDQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYGTEEEAAMAYDMAAIEYRGLNAPKTEDEDSHETGGLLNREVEVEAEAHHVSPITTSTPPSGSSSAVDCPPPPSNPPPPPPPRSFPEDIQTFFESQDSGIYIDTDDIIFGDLTSIASPIFHYELNA 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04401 298 FunFam AP2-like ethylene-responsive transcription factor 39 108 - -
Pumo4g04401 298 SUPERFAMILY DNA-binding domain 39 108 IPR016177 GO:0003677
Pumo4g04401 298 PRINTS Ethylene responsive element binding protein signature 41 52 IPR001471 GO:0003700|GO:0006355
Pumo4g04401 298 PRINTS Ethylene responsive element binding protein signature 88 108 IPR001471 GO:0003700|GO:0006355
Pumo4g04401 298 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 15 198 - -
Pumo4g04401 298 MobiDBLite consensus disorder prediction 223 260 - -
Pumo4g04401 298 ProSiteProfiles AP2/ERF domain profile. 40 106 IPR001471 GO:0003700|GO:0006355
Pumo4g04401 298 MobiDBLite consensus disorder prediction 237 258 - -
Pumo4g04401 298 SMART rav1_2 40 112 IPR001471 GO:0003700|GO:0006355
Pumo4g04401 298 SMART rav1_2 142 203 IPR001471 GO:0003700|GO:0006355
Pumo4g04401 298 MobiDBLite consensus disorder prediction 1 41 - -
Pumo4g04401 298 SUPERFAMILY DNA-binding domain 141 195 IPR016177 GO:0003677
Pumo4g04401 298 Gene3D AP2/ERF domain 141 198 IPR036955 GO:0003700|GO:0006355
Pumo4g04401 298 Gene3D AP2/ERF domain 40 108 IPR036955 GO:0003700|GO:0006355
Pumo4g04401 298 ProSiteProfiles AP2/ERF domain profile. 142 213 IPR001471 GO:0003700|GO:0006355
Pumo4g04401 298 Pfam AP2 domain 141 192 IPR001471 GO:0003700|GO:0006355
Pumo4g04401 298 Pfam AP2 domain 40 98 IPR001471 GO:0003700|GO:0006355
Pumo4g04401 298 CDD AP2 141 195 IPR001471 GO:0003700|GO:0006355
Pumo4g04401 298 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04401 Pumo-Chr4 85052614 85057079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04401 25 242 AP2-EREBP Transcription Factor Family AT5G57390 58.257 1.49e-85 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Pumo4g04401 AP2 2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04401 K09285 - gmx:100807781 377.481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g04401 4 85052614 85057079 Pumo4g04401 4 85052614 85057079 ECH