Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04397 ATGGTTTTCTTACAAACCTTGTTCTTCCTTTTACTTGTTGTAACATTTGGTCACTCCTTAACTCCAAGGCACCCTTCTCATTCTCTACTAACAGATAAAGCTGCTCTTCTGGAATTCAGAAAAACAATCATATCAGACCCGCATTCCTCACTTGCTAACTGGGATGAAGCTGTTCATGTGTGCAACTTCACGGGTGTTGTATGTGACAAATTCCATAACCGTGTCACACGACTAATCCTATATGATAAAGGTCTAGTGGGGCTGCTTTCACCCGTTCTTTCCAATCTCACTGGACTGCACTACCTTGAGATTGTTCGCAGTCACTTATTTGGCATTATTCCACCTGATTTTTCCAACCTCAGACGCCTTCACAGCATCACTCTTGAGGGGAACAATTTGCATGGCTCAATACCAGAGTCCTTTTCCATGCTTTCCAAGCTTTACTTTTTTATCATTAAGGAAAACAACATATCAGGTTCACTTCCTCCATCTCTCTTTTCCAACTGCACTCTGCTAGACGTTGTGGACTTTTCCAGCAACTCATTAACTGGTCAAATCCCACAAGAGATTGGAAACTGCAAAAGCCTGTGGAGTATCAGTTTATACAATAATCAATTTACTGGGCAACTTCCTCTCTCACTCACCAATCTAACGCTTCAAAATTTAGACGTGGAGTACAATTATCTGTTTGGTGAATTGCCTACAAAGTTTGTAAGCAGCTGGCCAAATCTTCTTTACCTTCATTTATCGTACAACAATATGGTAAGCCATGATAACAACACCAATCTTGATCCATTTTTCACTGCTCTCAGAAACAACAGTAATCTAGAGGAGCTTGAATTGGCAGGAATGGGCCTTGGGGGAAGGTTCACCAATACTGTCGCCAGCCAACTCACCAGTCTAAGAACCCTTCTCCTGCAGGAAAACCAAATTTTTGGATCAATTCCTCGCAGCTTAGCGAACCTTTCAAGGCTTTTCATTCTGAATTTAACATCCAATCTTCTAAATGGGACTATATCCTCTGATATCTTCTTCAGATTGCCAAAGTTGGAACAACTTTCCTTATCACACAACCTTTTCAAAACTCCAATTCCTGAAGCAATAGGCAAGTGTCTTAATCTGGGTCTACTGGATCTGTCACATAATCAATTCTCAGGTAGGATTCCAGACAGTTTGGGAAATTTGGTTAGACTAAATTCTTTGTTTCTCAACAATAACCTTCTCTCAGGAACAATACCTCCCACATTGGGACGGTGTACTAATCTGTACAGGCTTGACTTGTCCCATAATAGATTAACAGGAAGCATACCACTGGAACTGGCAGGCTTGCATGAGATCAGAATTTTCATAAATGTCTCTCATAACCACCTTGAAGGTCCCCTGCCAATTGAGCTCAGCAAATTAGAGAAGGTTCAGGAGATGGATCTTTCATCCAATTACCTAACTGGAAGTATCTTCCCTCAAATAGCAGGATGCATTGCTGTTTCAATGATTAATTTTTCACACAATTTTCTTCAAGGTGAGCTCCCACAGTCCCTAGGCGATCTGAAGAACCTCGAATCTTTTGATGTTTCAAGAAATCAGTTATCTGGATTGATACCAGCAACACTTGGTAAAATTGACACACTCACCTTTCTCAATTTATCATTTAACAATCTGGAAGGAAAGATTCCATCTGTTGGTATCTTTAATTCAGTTTCAAACTTGTCATTCTTAGGAAATCCACAACTTTGTGGGACAATTGCAGGAATACCCTTGTGCTCTCAAAGGAGAAAATGGTTTCACACTCGTTTGTTATTGATTATATTCATTTTGGTCATCTTCATATCAACATTGTTGTCAATAATTTGCTGTGTAATTGGATGCAAGCGTCTTAAAGTAATCATCAGCTCTCAGAGGACTCAGGCAAGCAAAAATGCAGCTAGACCTGAGTTGATTAGTAACTTCCCAAGAATCACGTATAAGGAACTGTCAGATGCCACTGGAGGATTTGACGATCAGAGGCTTGTTGGATCAGGTAGTTATGGAGATGTCTACAGGGGCATTCTCACGGATGGGACACCAATAGCAGTCAAGGTGCTGCATTTGCAATCTGGAAATTCTACCAAGAGCTTTAACAGAGAATGTCAAGTTTTGAAGAGAATTAGACACAGAAATCTGATAAGGATTATCACAGCATGTAGCCTACCTGATTTTAAGGCTCTTGTTCTACCTTATATGGCCAATGGGAGCTTGGAGAGCCGCCTCTATCCCTCTTGCGGTTCATCAGACTTGAGTATTGTCCAGAGGGTGAATATTTGCAGTGATGTAGCTGAAGGGATGGCCTATTTGCATCATCATTCTCCTGTTAGAGTCATACATTGTGATCTAAAACCAAGCAATATTCTTCTCAATGATGACATGACAGCTCTCGTTTCTGATTTTGGGGTTGCAAGGCTAATTATGAGTGTTGGAGGTGGGGCTATTGATAACATGGGCAACTCTAGTGCAAATTTGTTCTGTGGATCCATTGGATACATTGCACCAGAATATGGATTTGGATCCAATACATCTACCAAAGGAGATGTCTATAGCTTTGGCATTCTAGTTCTTGAGATGGTGACAAGAAGAAGACCAACAGATGACATGTTTGTTGGTGGGTTAAGTCTGCACAAATGGGTAAAGATTCATTTTCATGGAAGGGTAGAAAAGGTGGTAGATCCTGCTTTGGTGACAGCCTCAAGAGATCAATCCCAAGAGGTTAGAAAGATGTGGGAAGTTGCTATTGCGGAGTTAATTGAGTTGGGGCTTCTTTGCACACAGGAGTCACCTTCGACTAGACCAACCATGCTTGATGCAGCAGATGACTTAAATCGTCTCAAGAGATACCTTAATGGGGACACAACAGGAACTTTTGCCTCATCACTTGGAATTTCATCTTCCACTATAGGTGGTGACTGGTGA 2943 0.4108 MVFLQTLFFLLLVVTFGHSLTPRHPSHSLLTDKAALLEFRKTIISDPHSSLANWDEAVHVCNFTGVVCDKFHNRVTRLILYDKGLVGLLSPVLSNLTGLHYLEIVRSHLFGIIPPDFSNLRRLHSITLEGNNLHGSIPESFSMLSKLYFFIIKENNISGSLPPSLFSNCTLLDVVDFSSNSLTGQIPQEIGNCKSLWSISLYNNQFTGQLPLSLTNLTLQNLDVEYNYLFGELPTKFVSSWPNLLYLHLSYNNMVSHDNNTNLDPFFTALRNNSNLEELELAGMGLGGRFTNTVASQLTSLRTLLLQENQIFGSIPRSLANLSRLFILNLTSNLLNGTISSDIFFRLPKLEQLSLSHNLFKTPIPEAIGKCLNLGLLDLSHNQFSGRIPDSLGNLVRLNSLFLNNNLLSGTIPPTLGRCTNLYRLDLSHNRLTGSIPLELAGLHEIRIFINVSHNHLEGPLPIELSKLEKVQEMDLSSNYLTGSIFPQIAGCIAVSMINFSHNFLQGELPQSLGDLKNLESFDVSRNQLSGLIPATLGKIDTLTFLNLSFNNLEGKIPSVGIFNSVSNLSFLGNPQLCGTIAGIPLCSQRRKWFHTRLLLIIFILVIFISTLLSIICCVIGCKRLKVIISSQRTQASKNAARPELISNFPRITYKELSDATGGFDDQRLVGSGSYGDVYRGILTDGTPIAVKVLHLQSGNSTKSFNRECQVLKRIRHRNLIRIITACSLPDFKALVLPYMANGSLESRLYPSCGSSDLSIVQRVNICSDVAEGMAYLHHHSPVRVIHCDLKPSNILLNDDMTALVSDFGVARLIMSVGGGAIDNMGNSSANLFCGSIGYIAPEYGFGSNTSTKGDVYSFGILVLEMVTRRRPTDDMFVGGLSLHKWVKIHFHGRVEKVVDPALVTASRDQSQEVRKMWEVAIAELIELGLLCTQESPSTRPTMLDAADDLNRLKRYLNGDTTGTFASSLGISSSTIGGDW 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04397 980 Pfam Protein kinase domain 665 946 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g04397 980 Gene3D Transferase(Phosphotransferase) domain 1 740 964 - -
Pumo4g04397 980 ProSitePatterns Serine/Threonine protein kinases active-site signature. 785 797 IPR008271 GO:0004672|GO:0006468
Pumo4g04397 980 ProSiteProfiles Leucine-rich repeat profile. 421 444 IPR001611 GO:0005515
Pumo4g04397 980 ProSitePatterns Protein kinases ATP-binding region signature. 670 692 IPR017441 GO:0005524
Pumo4g04397 980 Gene3D Phosphorylase Kinase; domain 1 645 739 - -
Pumo4g04397 980 SUPERFAMILY L domain-like 321 579 - -
Pumo4g04397 980 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 645 739 - -
Pumo4g04397 980 SUPERFAMILY Protein kinase-like (PK-like) 642 950 IPR011009 -
Pumo4g04397 980 Gene3D Ribonuclease Inhibitor 31 146 IPR032675 -
Pumo4g04397 980 Gene3D Ribonuclease Inhibitor 147 218 IPR032675 -
Pumo4g04397 980 CDD STKc_IRAK 670 953 - -
Pumo4g04397 980 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Pumo4g04397 980 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 740 962 - -
Pumo4g04397 980 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 398 951 - -
Pumo4g04397 980 Pfam Leucine rich repeat 300 359 IPR001611 GO:0005515
Pumo4g04397 980 SMART serkin_6 664 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g04397 980 Gene3D Ribonuclease Inhibitor 219 589 IPR032675 -
Pumo4g04397 980 ProSiteProfiles Protein kinase domain profile. 664 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g04397 980 FunFam Leucine-rich repeat receptor-like protein kinase 30 188 - -
Pumo4g04397 980 FunFam LRR receptor-like serine/threonine-protein kinase EFR 293 592 - -
Pumo4g04397 980 SUPERFAMILY L domain-like 58 337 - -
Pumo4g04397 980 SMART LRR_typ_2 347 371 IPR003591 -
Pumo4g04397 980 SMART LRR_typ_2 120 143 IPR003591 -
Pumo4g04397 980 SMART LRR_typ_2 516 539 IPR003591 -
Pumo4g04397 980 SMART LRR_typ_2 322 346 IPR003591 -
Pumo4g04397 980 SMART LRR_typ_2 298 321 IPR003591 -
Pumo4g04397 980 SMART LRR_typ_2 144 168 IPR003591 -
Pumo4g04397 980 SMART LRR_typ_2 395 419 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04397 Pumo-Chr4 85010226 85013724 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04397 31 940 Receptor kinase-like Gene Family AT3G47570 35.318 6.28e-167 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Pumo4g04397 Pkinase 3.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04397 - - gmx:100815766 1811.19