Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04395 ATGTTGATCAAGGTGAAGCAGTCGACGATGGTGCGGCCGGCGGAGGAGACGCCGCGGAGGGCGTTGTGGAATTCGAACGTGGACTTGGTGGTGCCGAATTTCCACACGCCTAGCGTGTATTTCTATAGGCCAAACGGGGCCTCCAATTTCTTCGACGCCAACGTTATGAAGGAGGCCCTGAGCAAGGCACTGGTCCCTTTCTACCCAATGGCCGCCCGCCTCCGCCGCGACGAGGACGGCCGCGTGGAGATTTACTGCCACGGTCAGGGCGTGCTCTTCGTGGAGGCTGAAACCACCGCCTCCATCGACGACTTCGCCGACTTCGCTCCCACCCTTCAGCTCCGCCAGCTCATCCCCGCCGTCGATTATTCTGCCGGGATCCAAAACTATCCGCTCTTGGTGCTACAGGTAACATATTTTAAATGTGGAGGAGTCTCATTAGGGGTTGGTATGCAACACCATGTAGCAGATGGAGCATCTGGTCTTCACTTTATCAATGCATGGTCGGATGTTGCTCGTGGGTTGGATATTTCCCTCCCACCATTCATTGACAGGACACTAATCCGAGCCCGGGATCCACCTCGACCTGTTTTTGATCACATTGAATACAAGCCACCACCAGCCATGAAGACTCCTCCCCTACAACAACAACCCATAAAACCAGGAGGCTCTGACAGTGCTGTGGCCGTCTCTACTTTCAAATTGACTCGTGACCAACTCAGCACCCTCAAGGGTAAGTCCAGAGAAGATGGCAACACAATCACCTATAGCTCTTACGAGATGTTGGCTGGTCATGTATGGAGAAGTGTGTGCATGGCAAGAGCACTTCCTCATGACCAAGAAACCAAATTGTTCATTGCAACTGATGGACGGGCAAGGCTGCAACCTCCCCTCCCCCCTGGTTACTTTGGCAATGTCATCTTCACCACCACTCCTATTGCAGTCGCAGGTGATCTCATGTCAAAACCAACATGGTATGCTGCTAGCAGAATCCACGATGCATTAGTACGAATGGACAACGAATATTTGAGATCGGCTCTTGACTTTCTAGAGCTACAGCCTGATCTTAAAGCTCTTGTTCGCGGAGCACACACTTTTAAGTGTCCAAATCTTGGTATCACTAGCTGGGTAAGGCTTCCAATCCATGATGCTGACTTTGGTTGGGGAAGACCCATTTTCATGGGACCTGGTGGGATTGCATACGAGGGGCTATCTTTCATAATTCCAAGCTCAACAAATGATGGGAGCTTGTCTGTGGCAATTGCTCTGCCGCCTGAGCAAATGAAAGTGTTTCAGGAGTTGTTTTATGACATTTGA 1317 0.5125 MLIKVKQSTMVRPAEETPRRALWNSNVDLVVPNFHTPSVYFYRPNGASNFFDANVMKEALSKALVPFYPMAARLRRDEDGRVEIYCHGQGVLFVEAETTASIDDFADFAPTLQLRQLIPAVDYSAGIQNYPLLVLQVTYFKCGGVSLGVGMQHHVADGASGLHFINAWSDVARGLDISLPPFIDRTLIRARDPPRPVFDHIEYKPPPAMKTPPLQQQPIKPGGSDSAVAVSTFKLTRDQLSTLKGKSREDGNTITYSSYEMLAGHVWRSVCMARALPHDQETKLFIATDGRARLQPPLPPGYFGNVIFTTTPIAVAGDLMSKPTWYAASRIHDALVRMDNEYLRSALDFLELQPDLKALVRGAHTFKCPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSFIIPSSTNDGSLSVAIALPPEQMKVFQELFYDI 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04395 438 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 7 436 - -
Pumo4g04395 438 FunFam Spermidine hydroxycinnamoyl transferase 1 203 - -
Pumo4g04395 438 FunFam Tryptamine hydroxycinnamoyl transferase 215 436 - -
Pumo4g04395 438 Gene3D - 223 438 IPR023213 -
Pumo4g04395 438 Gene3D - 1 205 IPR023213 -
Pumo4g04395 438 Pfam Transferase family 3 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04395 Pumo-Chr4 85002264 85006593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04395 1 438 Monolignol Biosynthesis Gene Families AT5G48930 75.342 0.0 696
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04395 K13065 - gmx:100801923 812.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g04395 4 85002264 85006593 Pumo7g00073 7 908820 913257 PCT