Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04387 ATGAATTGCTTTTCCTTAATATCTCCTACTGTTTTAGGTTTTGCGGTCAACATAGTGACTGTTGTTATGATTGTTGTGCTTGGATTTAATCAGAAGATTGATCGAGGAGTTCGGAGATCAGATGCCCAGATGACCCTTCCAGAAAAATTTGTCCTGGATTTTATACCAGCTGTTGGAGCATGTCTTTCAATTGTAGACATAATTTCTCTGTGGAAGAAAGAGCATAATAGTCACTTTGTTGGATATCATAAATGGTTCTATAGCTGTTCTGAGTTGATGGTGTGGATATATATCATTCTTTTCACAAAGCGTGCCAGCAGTCATTACATTGTCTTCAACCGTGTCTTATGTTTCTGGTGGATTCTGAAAGCAATATTGGCAGTTTTCTATTTGATGACAAAGTTTTCATCATTGAAGGTTTCAGAATGCGTCGTGGAAAGCTTAGTTGTTCTCTTGAATATCTCATTTGGCATAGCTATCAATGTGATCAGGATAAAGAGACCATCTTTCAAAAGCAGTTTATTGGAAGATCCACTTCTTTCGAATGGTGTGGACCTTGAGGAAGGTGGCTATCATGACCTTGGAAATAATGGAAACTTTTGGGATTTGATGACTTTCAAATTCATAACTCCAGTAATGAATCATGGTGTGGTAAAGCAATTAGACTCTGAAGATCTGTTGCCGCTACCTACTGATATGGGTCCTTCTTCCTGTCATGATGTGATTTTATCCTGCTGGCAAGCTCAAGTGAGTAACAATGGTTCGAACCCATCTTTGTTTAGAGCACTCTGTAGTGCGTATGGATGGCCATATCTCTGCCTGGGTTTATTGAAGGTGATTAATGATTGTATTGGTTTTGCGGGACCATTGCTTCTCAATAAGCTGATCCAGTTTCTTCAGCAAGGTTCAGTGAATTTGGATGGGTATTTACTTGCATTATCCTTGGGCCTCACCTCTATAATTAAATCCTTTTTAGATACACAATATACTTTTCATCTTTCCAAACTGAAGCTGAAGCTGCGATCTAGTATCATGACTCTAATCTATGAGAAGTGCCTACGTGTGAACTTAGCAGAGCGTTCAAAATTCACAAATGGCGAAATTCAGACATTTATGTCAGTGGATGCTGACCGAACTGTCAATTTGTGTAATAGTTTCCATGATATGTGGAGCCTGCCTTTGCAAATTGGAGTTGCGCTCTGTCTTTTGTATACTCAAGTCAAATTTGCATTTGTATCTGGATTAGCAATAACCATTTTATTGATACCAGTGAATAAATGGATATCACAATTGATTGCAAGTGCTACCGAGCAAATGATGAAGGAGAAGGATGAAAGGATTCGTAGAACAGGAGAACTTTTGACTTATATTCGCACTTTGAAGATGTATGGATGGGAACTTCTTTTTTCTAGTTTGTTGATGGATACAAGATCTTTGGAAGTCAAACACTTAGCTACTCGGAAGTACTTGGATGCATGGTGTGTTTTCTTTTGGGCTACAACACCAACACTCTTTTCTCTTTTCACATTTGGACTCTTTGCACTGATGGGACATCAACTTGATGCTGCAATGGTTTTCACTTGTCTTGCTTTGTTTAACACACTGATTTCACCACTAAATTCATTCCCTTGGGTAATTAATGGATTGATTGATGCCATCATATCCTCCAGACGATTGAGTAGGTTTCTCTCTTGTCCTGAACATAAATTTAAAGTGGGAGACACAAATTCCTGTCCATCATCATTCCTAAGTAAACAGCCTGATTCTGTACAAGGTTTGGGTGTCTTTATCCAAGATGCATGTTGTACTTGGTCAAGCAGTGAGGAACAAACATTAAATTTGGTGTTGAATCATGTGACTCTAAGTGTGTCCCAGGGTTCCTTTGTTGCAGTTATTGGAGAGGTTGGTTCTGGTAAATCATCCCTGTTATATTCAATTCTTGGAGAAATGCGGCTTGCTCGTGGCTCTATTTATTCCGATGAATCCATTGCTTATGTACCACAGGTCCCTTGGATTTTATCTGGAACAGTGCATGACAACATATTATTTGGGAAAAGCTATGATCCTGAAAGGTATACTGATACACTGCAGGCATGTGCATTAGATGTTGATGTCTCATTGATGGTTGGAGGTGACATGGCTTATATTGGAGAGAAAGGAGTCAATTTATCAGGTGGACAGAGAGCTCGTCTTGCTTTGGCAAGGGCAATATATCATGACTCAGATGTTGTTATGCTTGATGATGTCTTGAGTGCAGTTGATGTACAAGTTGCTCAATGTATCTTACACAATGCCATTTTAGGTCCTCTTATGCAGAGAAAAACCCGATTGCTCTGTACCCATAACATTCAGGCAATATCTTCTGCTGATATGATTGTTGTAATGGACAAGGGACACATAAAGTGGATGGGAAATTCAGCTGACTTTCCAATTTCTTCATATACAGAATTCTCTCCATTGAATGAAATTGATTCAGCTTTACAGAATCACAGACAATCTTGCAGCACAAATCTTTCATCCAAATCCAAGGAGCAGTCTCTTCCTGATTCGGCTATTGTGCATGCTCTGGAGGGAGCAGAGGAGATAGTTGAAGTTGAGTTGAGGAAAGAGGGAAAAGTTGAACTTGGAGTGTATAAGAATTATGCTGTCTTCACTGGCTGGTTCATGACAGTCATTATATGCCTATCAGCTATTCTGATGCAAGCTTCTCGTAATGGGAATGATTTATGGCTGTCATATTGGGTTGATACAACAACAGAAAGCAGTCTAACAAGATATTCTGTGTCTTTCTATCTGGCTATACTATGTCTCTTTTGTATTATGAATTCCTTTTTCACATTGGTGAGGGCATTCTCTTTTGCATTTGGTGGATTGCAAGCAGCAACTAAGGTACACAATAAATTGCTCAACAAGCTTATCAATGCACCTGTGCAATTCTTTGATCAGACCCCGGGTGGGAGAATACTGAACAGGTTATCTTCAGATCTTTATACAATTGATGATTCTCTTCCATTCATTATGAACATTCTCCTAGCTAATTTTGTAGGCTTGTTGGGTATTACAATAATTTTGTGTTATGTACAGGTTTTCTTCTTACTCTTGCTATTGCCATTTTGGTATATCTACAGTAGACTGCAGTTCTTCTACAGGTCAACATCAAGAGAATTACGAAGACTGGACAGTGTTTCTCGTTCTCCAATATACACATCTTTCACTGAAACACTTGATGGATCATCAACTATTAGGGCATTTAAATCTGAGGACTTTTTCTTTGCCAAATTCATTGAACATATAACCTTGTATCAGAAGACTTCCTACACAGAGATAGTGGCAAGTTTGTGGCTTTCCTTGCGTCTTCAATTATTAGCTGCATTTATCATCTCATTCATAGCTGTGATGGCTGTTGTTGGATCTCATGGCAGTCTGCCTATCAACTTTGGTACCCCAGGACTGGTAGGATTGGCCCTCTCATATGCAGCTCCAATTGTGTCCCTGTTGGGGAGTTTTTTATCAAGCTTCACCGAAACAGAAAAGGAAATGGTTTCAGTTGAAAGAGCCCTTCAATACATGGACATTCCTCAAGAAGAACAAACTGGATGCCTATACTTGAGTCCAGATTGGCCAAATCAAGGAGTTATCGAATTCCAGTCTGTTACTTTGAAATATATGCCATCTTTGCCAGCTGCACTCTGCAATCTTACTTTTAGAATTGCAGGAGGGACACAAGTTGGAATAATTGGAAGAACAGGTGCTGGAAAGTCTAGTGTATTAAATGCCCTTTTCCGCCTTACCCCAATATGTACAGGCTCTATCACAATAGATGGCATGGATATTAAAAATATTCCTGTCAGAGAACTACGTACACATTTGGCCATTGTTCCTCAGAGTCCATTTTTGTTCGAAGGATCATTAAGGGATAACCTAGATCCATTGAAAATGAATGACGACTTAAAAATTTGGAATGCATTGGAGAAGTGCCATGTGAAAGAGGAAGTAGAAGTAGCAGGAGGGCTGGATGTTCTTGTAAAGGAAGCCGGGATGTCATTTTCAGTTGGCCAGCGGCAGCTTCTTTGCCTTGCACGTGCACTTCTGAAATCTTCAAAGGTTCTCTGTTTGGATGAATGCACGGCCAATGTAGACATTCGAACTGCTTCACTGCTGCAAAATACCATATCCAGTGAATGCGAAGGAATGACAGTGCTCACAATTGCTCACCGGATTTCAACTGTTATAAATATGGACAGCATTCTGATTCTTGACCATGGGAAGCTGGCTGAACAGGGAAATCCGCAGGTCCTTCTAAAAGATGACTCCTCTGTATTTTCTAGTTTTGTTAGAGCTTCAGCATTGTAA 4353 0.396 MNCFSLISPTVLGFAVNIVTVVMIVVLGFNQKIDRGVRRSDAQMTLPEKFVLDFIPAVGACLSIVDIISLWKKEHNSHFVGYHKWFYSCSELMVWIYIILFTKRASSHYIVFNRVLCFWWILKAILAVFYLMTKFSSLKVSECVVESLVVLLNISFGIAINVIRIKRPSFKSSLLEDPLLSNGVDLEEGGYHDLGNNGNFWDLMTFKFITPVMNHGVVKQLDSEDLLPLPTDMGPSSCHDVILSCWQAQVSNNGSNPSLFRALCSAYGWPYLCLGLLKVINDCIGFAGPLLLNKLIQFLQQGSVNLDGYLLALSLGLTSIIKSFLDTQYTFHLSKLKLKLRSSIMTLIYEKCLRVNLAERSKFTNGEIQTFMSVDADRTVNLCNSFHDMWSLPLQIGVALCLLYTQVKFAFVSGLAITILLIPVNKWISQLIASATEQMMKEKDERIRRTGELLTYIRTLKMYGWELLFSSLLMDTRSLEVKHLATRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNTLISPLNSFPWVINGLIDAIISSRRLSRFLSCPEHKFKVGDTNSCPSSFLSKQPDSVQGLGVFIQDACCTWSSSEEQTLNLVLNHVTLSVSQGSFVAVIGEVGSGKSSLLYSILGEMRLARGSIYSDESIAYVPQVPWILSGTVHDNILFGKSYDPERYTDTLQACALDVDVSLMVGGDMAYIGEKGVNLSGGQRARLALARAIYHDSDVVMLDDVLSAVDVQVAQCILHNAILGPLMQRKTRLLCTHNIQAISSADMIVVMDKGHIKWMGNSADFPISSYTEFSPLNEIDSALQNHRQSCSTNLSSKSKEQSLPDSAIVHALEGAEEIVEVELRKEGKVELGVYKNYAVFTGWFMTVIICLSAILMQASRNGNDLWLSYWVDTTTESSLTRYSVSFYLAILCLFCIMNSFFTLVRAFSFAFGGLQAATKVHNKLLNKLINAPVQFFDQTPGGRILNRLSSDLYTIDDSLPFIMNILLANFVGLLGITIILCYVQVFFLLLLLPFWYIYSRLQFFYRSTSRELRRLDSVSRSPIYTSFTETLDGSSTIRAFKSEDFFFAKFIEHITLYQKTSYTEIVASLWLSLRLQLLAAFIISFIAVMAVVGSHGSLPINFGTPGLVGLALSYAAPIVSLLGSFLSSFTETEKEMVSVERALQYMDIPQEEQTGCLYLSPDWPNQGVIEFQSVTLKYMPSLPAALCNLTFRIAGGTQVGIIGRTGAGKSSVLNALFRLTPICTGSITIDGMDIKNIPVRELRTHLAIVPQSPFLFEGSLRDNLDPLKMNDDLKIWNALEKCHVKEEVEVAGGLDVLVKEAGMSFSVGQRQLLCLARALLKSSKVLCLDECTANVDIRTASLLQNTISSECEGMTVLTIAHRISTVINMDSILILDHGKLAEQGNPQVLLKDDSSVFSSFVRASAL 1450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04387 1450 Gene3D ABC transporter type 1, transmembrane domain 260 567 IPR036640 GO:0005524|GO:0016020
Pumo4g04387 1450 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1213 1446 IPR003439 GO:0005524
Pumo4g04387 1450 SMART AAA_5 625 799 IPR003593 GO:0016887
Pumo4g04387 1450 SMART AAA_5 1239 1429 IPR003593 GO:0016887
Pumo4g04387 1450 CDD ABC_6TM_MRP7_D2_like 890 1190 - -
Pumo4g04387 1450 ProSitePatterns ABC transporters family signature. 723 737 IPR017871 GO:0005524|GO:0016887
Pumo4g04387 1450 Pfam ABC transporter 1232 1377 IPR003439 GO:0005524
Pumo4g04387 1450 FunFam ABC transporter C family member 13 578 832 - -
Pumo4g04387 1450 FunFam Multidrug resistance-associated protein ABC domain protein 250 568 - -
Pumo4g04387 1450 FunFam ATP-binding cassette (ABC) transporter, putative 1200 1447 - -
Pumo4g04387 1450 Gene3D - 1200 1448 IPR027417 -
Pumo4g04387 1450 SUPERFAMILY ABC transporter transmembrane region 887 1195 IPR036640 GO:0005524|GO:0016020
Pumo4g04387 1450 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1207 1438 IPR027417 -
Pumo4g04387 1450 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 611 808 IPR027417 -
Pumo4g04387 1450 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 595 822 IPR003439 GO:0005524
Pumo4g04387 1450 Pfam ABC transporter transmembrane region 273 539 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo4g04387 1450 Pfam ABC transporter transmembrane region 891 1140 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo4g04387 1450 ProSitePatterns ABC transporters family signature. 1349 1363 IPR017871 GO:0005524|GO:0016887
Pumo4g04387 1450 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 198 1446 - -
Pumo4g04387 1450 CDD ABCC_MRP_domain1 597 798 - -
Pumo4g04387 1450 CDD ABC_6TM_MRP7_D1_like 274 559 - -
Pumo4g04387 1450 Pfam ABC transporter 616 748 IPR003439 GO:0005524
Pumo4g04387 1450 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 276 551 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo4g04387 1450 Gene3D - 591 840 IPR027417 -
Pumo4g04387 1450 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 891 1178 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo4g04387 1450 CDD ABCC_MRP_domain2 1211 1430 - -
Pumo4g04387 1450 Gene3D ABC transporter type 1, transmembrane domain 858 1197 IPR036640 GO:0005524|GO:0016020
Pumo4g04387 1450 SUPERFAMILY ABC transporter transmembrane region 262 567 IPR036640 GO:0005524|GO:0016020
Pumo4g04387 1450 FunFam ABC transporter C family member 5 855 1196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04387 Pumo-Chr4 84914461 84929161 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04387 588 842 Calmodulin-binding Proteins AT2G36910 25.091 5.81e-17 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04387 K05674 - gmx:100814181 2602.78