Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04384 ATGCATCTCTCACTTCGTTTACTACGAACTTACTTCACAAACTTAGAAGCTCTATACTTTCTTCATCTAGCTAGAATTTGGCGTTTGCTTTCAACAAGAGCTTTAGCTTTCTTGAGAACTTCTTTGAATTTCATGGATTATTCATCATGGATTAACACTTCCTTGGATCTCAACATTAATCCCCACAGGGTCCATGAAGAAGTTCCCAAAAAGGAGGTGGAAAACAATTTTTTCTCATTGGGGGTGAAGAAATCTTCTGTAAAAGAAGAGTCTGCTGGTGCCTTGGTGGAGGAGCTGAAGCGGGTGAGTGCAGAAAACAAGAAGTTGACCGAAATGCTGACAGAGATGTGTGAGAACTACAACGCTTTGCGAAGCAATTTGATGGAATATGTGAGGAAGAATCCTGATAAGGAGCTCAGCTCATCCAAGAAAAGGAAGTCTGAAAGCAGCAACAACAATAGTATTCCAATGGGAGTCAACGGAACCTCTGAAAGCAGCTCAACTGATGAAGAAGAATCATGCAAGAAACCAAAGGAAGACATCAAGGCCAAAATTTCAAGAGTTTATATGAGGACAGAAGCATCTGATACAAGCCTTATTGTGAAAGATGGATACCAATGGAGGAAATATGGACAAAAGGTGACCAGGGATAACCCTTCTCCAAGAGCATACTTCAAGTGCTCTTTTGCTCCAAGCTGCCCGGTCAAAAAAAAGGTGCAAAGAAGTGTGGATGATCAATCTGTTCTGGTTGCAACTTATGAAGGAGAGCACAATCATCCCCACCCTTCTCAAATGGAGGTAACAACAGGCTCCAGCCGTTGTGTGACCCTAGCTTCAGCGTCTCTTACCGCTTCTGCACCAACAGTAACCCTTGACTGGACAAAATCCAAGTCCAGCAGCAACTCTAAGAATATGAATATAAATCCCAAAATCGAATCACCAGAAGTCCCGCAGGTTTTGGTAGAACAGATGGCTACTTCCTTGACCAAGGATCCTAATTTCAGAGCGGCACTAGTTGCCGCCATCTCAGGAAAAATGTTGCACAATAATTAA 1053 0.4255 MHLSLRLLRTYFTNLEALYFLHLARIWRLLSTRALAFLRTSLNFMDYSSWINTSLDLNINPHRVHEEVPKKEVENNFFSLGVKKSSVKEESAGALVEELKRVSAENKKLTEMLTEMCENYNALRSNLMEYVRKNPDKELSSSKKRKSESSNNNSIPMGVNGTSESSSTDEEESCKKPKEDIKAKISRVYMRTEASDTSLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSVDDQSVLVATYEGEHNHPHPSQMEVTTGSSRCVTLASASLTASAPTVTLDWTKSKSSSNSKNMNINPKIESPEVPQVLVEQMATSLTKDPNFRAALVAAISGKMLHNN 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04384 350 Gene3D WRKY domain 185 263 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo4g04384 350 MobiDBLite consensus disorder prediction 135 178 - -
Pumo4g04384 350 ProSiteProfiles WRKY domain profile. 196 262 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo4g04384 350 FunFam WRKY transcription factor 40 186 263 - -
Pumo4g04384 350 Coils Coil 92 126 - -
Pumo4g04384 350 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 71 346 IPR044810 GO:0003700
Pumo4g04384 350 MobiDBLite consensus disorder prediction 146 167 - -
Pumo4g04384 350 SUPERFAMILY WRKY DNA-binding domain 198 262 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo4g04384 350 Pfam WRKY DNA -binding domain 202 260 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo4g04384 350 SMART WRKY_cls 201 261 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04384 Pumo-Chr4 84886356 84888368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04384 48 350 WRKY Transcription Factor Family AT1G80840 53.605 1.22e-102 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo4g04384 WRKY 2.6e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04384 - - gsj:114388658 509.605