LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo4g04383	ATGGATCGGCGATCCAGCACCAGGAACATCCTCTTCAACAAGTACGAGATAGGGAAATTGCTGGGACAGGGCAACTTCGCCAAGGTATACCACGGCCGAAACCTCAGCACAAACGAGAGCGTGGCCATCAAGGTCATCAAAAAAGAGAGGCTTCAGAAAGAGAGGCTGGTCAAACAGATAAAACGCGAGGTCTCCGTCATGCGCTTGGTACGTCACCCCCACATCGTGGAATTAAAAGAAGTGATGGCCAACAAGGCCAAAATCTTCATGGTGGTCGAATACGTCAAGGGTGGAGAACTCTTCGCCAAGGTTGCAAAGGGCAAGATGAAGGAAGACGTCGCCAGAAAGTACTTTCAACAACTCATCAGCGCCGTCGATTTCTGCCACAGCCGCGGCGTCACCCACCGTGATTTGAAGCCCGAGAATCTGCTCCTCGACGAGAACGAAGACCTTAAAGTCTCCGACTTTGGCTTGTCGGCGCTGCCGGACCAGCGCAGATCCGACGGGATGCTCCTCACGCCGTGCGGCACGCCGGCCTACGTCGCGCCGGAGGTTCTCAAAAAGAAAGGCTACGATGGGTCCAAGGCTGATATATGGTCCTGCGGGGTTATCCTCTTTGCTCTTCTCTCTGGGTATTTACCCTTTCAAGGTGAGAATGTGATGAGAATTTACAGCAAGTCCTTCAAAGCTGATTATGCATTCCCCGAATGGATTTCCCCCGGGGCCAAAAACTTGATCTCTAATTTACTCGTTGTGGACCCGCAAAAGAGGTATTCCATCCCTGACATCATGAAGGACCCTTGGTTTCAAATTGGGTTCATGAGGCCCATCGCGTTTTCCATGAAGGAGACGGCTTTAGAAGATAACATTGATTTCAACGGGGATGATGATGTTCCTAGTGGTAGTAATAGTGATGATGGTAATAGCAACAACGATGATGGGGAATTGGCGGGGGCTAAGCCTGCTCGTCCGTCTTACAATGCTTTTGAGATAATATCGTCGTTGTCGCATGGGTTTGATCTTAGGAACTTGTTTGAGACGAGGAAGCGGTCGCCGTCGATGTTTATTTCAAAGTTTTCGGCTTCAACGGTGCTGGCGAAGCTGGAGGGGGTGGCGAAGAAGCTAAACTTTAGGGTGACGGGGAAGAAGGAGTTCATGGTGAGGATGCAGGGGGCGACGGAAGGGAGGAAGGGGAAGCTGGCGATGACGGTGGAGGTATTTGAGGTGGCGCCGGAGGTCGCGGTGGTGGAGTTCTCCAAGTCCGCTGGAGACACCCTTGAATACATTAAATTCTGTGAGGACCAAGTCAGACCTTCGCTCAAGGACATTGTGTGGAGCTGGCAAGGGGACGCTAATTCCCACCACCACCAGTAG	1374	0.5182	MDRRSSTRNILFNKYEIGKLLGQGNFAKVYHGRNLSTNESVAIKVIKKERLQKERLVKQIKREVSVMRLVRHPHIVELKEVMANKAKIFMVVEYVKGGELFAKVAKGKMKEDVARKYFQQLISAVDFCHSRGVTHRDLKPENLLLDENEDLKVSDFGLSALPDQRRSDGMLLTPCGTPAYVAPEVLKKKGYDGSKADIWSCGVILFALLSGYLPFQGENVMRIYSKSFKADYAFPEWISPGAKNLISNLLVVDPQKRYSIPDIMKDPWFQIGFMRPIAFSMKETALEDNIDFNGDDDVPSGSNSDDGNSNNDDGELAGAKPARPSYNAFEIISSLSHGFDLRNLFETRKRSPSMFISKFSASTVLAKLEGVAKKLNFRVTGKKEFMVRMQGATEGRKGKLAMTVEVFEVAPEVAVVEFSKSAGDTLEYIKFCEDQVRPSLKDIVWSWQGDANSHHHQ	457

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo4g04383	457	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	133	145	IPR008271	GO:0004672\|GO:0006468
	Pumo4g04383	457	Pfam	NAF domain	325	380	IPR004041	GO:0007165
	Pumo4g04383	457	SMART	serkin_6	15	269	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo4g04383	457	FunFam	Non-specific serine/threonine protein kinase	8	312	-	-
	Pumo4g04383	457	CDD	CIPK_C	327	441	-	-
	Pumo4g04383	457	Pfam	Protein kinase domain	15	269	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo4g04383	457	FunFam	Non-specific serine/threonine protein kinase	6	94	-	-
	Pumo4g04383	457	FunFam	Non-specific serine/threonine protein kinase	322	445	-	-
	Pumo4g04383	457	ProSiteProfiles	NAF domain profile.	321	346	IPR018451	GO:0007165
	Pumo4g04383	457	MobiDBLite	consensus disorder prediction	296	311	-	-
	Pumo4g04383	457	Gene3D	Transferase(Phosphotransferase) domain 1	6	312	-	-
	Pumo4g04383	457	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	6	441	-	-
	Pumo4g04383	457	ProSitePatterns	Protein kinases ATP-binding region signature.	21	48	IPR017441	GO:0005524
	Pumo4g04383	457	ProSiteProfiles	Protein kinase domain profile.	15	269	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo4g04383	457	SUPERFAMILY	Protein kinase-like (PK-like)	11	270	IPR011009	-
	Pumo4g04383	457	Gene3D	Kinase associated domain 1, KA1	322	446	-	-
	Pumo4g04383	457	Coils	Coil	43	63	-	-
	Pumo4g04383	457	MobiDBLite	consensus disorder prediction	292	321	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo4g04383	Pumo-Chr4	84857432	84859144	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo4g04383	1	455	CBL-interacting serine-threonine protein kinases	AT5G25110	58.553	0.0	559

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Pumo4g04383		Pkinase	3.4e-76	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo4g04383	-		-	gmx:100804244	818.15