Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04377 ATGGACAATAATAACGAGGAAATCCCCTCAACACCTGCAACGCCAGGCACTCCTGCTGGTGCACCTCTTTTTGGTGGGTTCAATAATGGTAGGAACAATAATAAGAAGAAGTCCCTCCTAAAGAGTTGTAGGTGTTTCAGTGTGGAGGATTGGAGCTTAGAAGATGGAGGGTTACCCGCGGTGTCATGCTCACTGCCAGCCCCTCCTCCAGTCCCTCTTGCAAGAAAGGTTGGAGCGGAGTTCATAGGGACCTTCATTCTGATGTTCGCTGGCACTGCCGCTGCCATTGTGAACCAAAAGACAAACGGGTCTGAGACCCTCATTGGATGTGCTGCCACCACTGGTCTTGCCGTTATGATCGTCATCCTCTCCACTGGCCACATCTCCGGTGCTCATCTCAACCCTGCTGTCACCATTTCCTTCGCTGCATTAAAGCACTTCCCCTGGAAGCATGTGCCTATGTATATTGGTGCACAAGTTTTGGCATCTATATGTGCCTCATTTGCTCTCAAGGGGGTTTATCACCCTTTCATGAGTGGTGGAGTCACCGTTCCTTCCGGAGGATATGGCCAAGCTTTTGCTTTAGAGTTCATTATTGCCTTCAACCTCATGTTCGTTGTCACTGCAGTCGCCACCGACACCAGAGCTGTGGGAGAACTCGCGGGAATCGCGGTGGGAGCGACTGTCATGCTCAATATACTCATAGCAGGGCCAGTATCCGGGGGCTCAATGAACCCAGTAAGAACACTAGGTCCTGCTGTGGCCGCAAACAACTACAAAGCCATATGGGTCTATCTGGTAGCTCCCATACTTGGAGCTTTAGGTGGGGCAGGTACCTACACTGCAGTGAAACTGCCTGAAGAAGATGATGACGCCAAGGCAAAGGCTTCAATCAGCAGCTTCAGAAGGTGA 912 0.5099 MDNNNEEIPSTPATPGTPAGAPLFGGFNNGRNNNKKKSLLKSCRCFSVEDWSLEDGGLPAVSCSLPAPPPVPLARKVGAEFIGTFILMFAGTAAAIVNQKTNGSETLIGCAATTGLAVMIVILSTGHISGAHLNPAVTISFAALKHFPWKHVPMYIGAQVLASICASFALKGVYHPFMSGGVTVPSGGYGQAFALEFIIAFNLMFVVTAVATDTRAVGELAGIAVGATVMLNILIAGPVSGGSMNPVRTLGPAVAANNYKAIWVYLVAPILGALGGAGTYTAVKLPEEDDDAKAKASISSFRR 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04377 303 MobiDBLite consensus disorder prediction 1 27 - -
Pumo4g04377 303 PRINTS Major intrinsic protein family signature 114 138 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo4g04377 303 PRINTS Major intrinsic protein family signature 263 283 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo4g04377 303 PRINTS Major intrinsic protein family signature 75 94 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo4g04377 303 PRINTS Major intrinsic protein family signature 226 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo4g04377 303 PRINTS Major intrinsic protein family signature 151 170 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo4g04377 303 PRINTS Major intrinsic protein family signature 195 213 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo4g04377 303 Pfam Major intrinsic protein 73 279 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo4g04377 303 SUPERFAMILY Aquaporin-like 72 289 IPR023271 -
Pumo4g04377 303 PANTHER AQUAPORIN NIP2-1 37 288 IPR034294 -
Pumo4g04377 303 CDD MIP 75 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo4g04377 303 Gene3D Glycerol uptake facilitator protein. 69 295 IPR023271 -
Pumo4g04377 303 ProSitePatterns MIP family signature. 132 140 IPR022357 -
Pumo4g04377 303 FunFam Aquaporin NIP2-1 63 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04377 Pumo-Chr4 84789433 84794174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04377 4 303 Major Intrinsic Protein MIP AT1G80760 76.375 2.54e-163 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04377 K09874 - gmx:100815637 513.457