Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04374 ATGGACCTTACATGGTCAGAAAATCTGAACATCCCATTTTCAGAGACTCCACCATGCTCAGAGCCAGTAGTACCTTCTTCCATAGATACCCAAAAGGAGGACAAAGAATACCCCCAAAAGGAGTCTGCTCCACACCTTGTACTGGATCTAAGTCTTCCTAGTAAGGATTCAGGTGATGATGAGTCAAAGCCAGAACTCAACCTCATCAACTGTATCGATACAAATTTGTCCATGAACTCCTCAGAATCTAGTCATGGGCATGGAGATGAATTGGAGCCCCGGATATTCTCATGCAACTACTGCCAAAGGAAGTTTTATAGTTCGCAGGCACTTGGGGGACACCAGAATGCGCATAAGCGTGAAAGAACTTTGGCAAAAAGAGGACACAAAGCTGGTGCTGCAGTTTCAATAGATTTTGCACGGAGGTACTCCAGTATGGCTTCTCTGCCTTTGCATGGTTCCTATAACAGGTCACTTGGAATTCAGGCGCATTCTATGATCAACAAACCCTCTTATCAAACACAAATACCCTTTTTTTCTCATCCTCAAAACGGGTGGCAGAAGCGGCCTATGTTCTCACAACCGGCAATTGGGCCAGAAAGTGAATCATCCTTCCCACGGTTAGGGAAGTTTTCTCCAAGGCTGGTGCCAGAGGGATTTGGGGGTCACTGGTTGGATAGTGTTAACCATTTGAAGACTAAACAAGAGGAGTTGCACAAGCTTGACTTGTCCCTTAAACTCTAA 744 0.453 MDLTWSENLNIPFSETPPCSEPVVPSSIDTQKEDKEYPQKESAPHLVLDLSLPSKDSGDDESKPELNLINCIDTNLSMNSSESSHGHGDELEPRIFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGHKAGAAVSIDFARRYSSMASLPLHGSYNRSLGIQAHSMINKPSYQTQIPFFSHPQNGWQKRPMFSQPAIGPESESSFPRLGKFSPRLVPEGFGGHWLDSVNHLKTKQEELHKLDLSLKL 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04374 247 MobiDBLite consensus disorder prediction 1 65 - -
Pumo4g04374 247 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Pumo4g04374 247 MobiDBLite consensus disorder prediction 1 27 - -
Pumo4g04374 247 Gene3D Classic Zinc Finger 74 143 - -
Pumo4g04374 247 SUPERFAMILY beta-beta-alpha zinc fingers 93 123 IPR036236 -
Pumo4g04374 247 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 123 IPR013087 -
Pumo4g04374 247 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 30 247 IPR044246 GO:0009788
Pumo4g04374 247 FunFam Zinc finger protein 2 73 142 - -
Pumo4g04374 247 MobiDBLite consensus disorder prediction 28 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04374 Pumo-Chr4 84760176 84761134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04374 6 247 C2H2 Transcription Factor Family AT5G10970 40.449 1.67e-45 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo4g04374 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04374 - - gmx:100812573 390.963