Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04373 ATGGCTAGACCCCAACAACGCTATCGAGGTGTCCGCCAGAGGCACTGGGGCTCTTGGGTCTCTGAAATTCGCCACCCTCTTTTAAAGACTAGAATATGGCTAGGAACGTTTGAAACGGCAGAAGATGCAGCTAGAGCGTACGATGAAGCAGCAAGGTTGATGTGTGGGCCAAAAGCACGCACCAATTTCCCTTACAATCCGAATGAGCCACAGTCATCATCATCGAAGCTCCTCTCAGCTACTTTGACTGCGAAGCTACACAAGTGTCACATGGCCTCTCTTTCCCTTCAAATGAGCAAGCAGAAACAGAAAGAGGGTCAAGGATCATCCAACTCAGGCAATGACATTGCGGGAACAAGTACTGCAAACAACACAGCCGAAGAAGTGCAGTGGCTAGGGGAGGAAGGCCAAGTTGAAGTGGCAGAACAGCAACAATTTCACCCAGTTCTTCAAGATGATCACATTGAACAGATGATACAGGAGCTGCTTGATTATGGCTCAATGGAGCTTAGTTCTGTTGACTCAGCCTAA 531 0.484 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFPYNPNEPQSSSSKLLSATLTAKLHKCHMASLSLQMSKQKQKEGQGSSNSGNDIAGTSTANNTAEEVQWLGEEGQVEVAEQQQFHPVLQDDHIEQMIQELLDYGSMELSSVDSA 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04373 176 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 120 - -
Pumo4g04373 176 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Pumo4g04373 176 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Pumo4g04373 176 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Pumo4g04373 176 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Pumo4g04373 176 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Pumo4g04373 176 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Pumo4g04373 176 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Pumo4g04373 176 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Pumo4g04373 176 MobiDBLite consensus disorder prediction 97 120 - -
Pumo4g04373 176 FunFam Ethylene-responsive transcription factor 2 6 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04373 Pumo-Chr4 84744003 84745113 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04373 1 173 AP2-EREBP Transcription Factor Family AT5G25190 66.851 1.52e-77 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo4g04373 AP2 6.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04373 - - gmx:100805499 273.092