Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04371 ATGGGAGGTCTGGAAGATATCAAGAACGAGGCAGTTGATCTCGAGCGGATACCTGTTGATGAAGTGTTCCGAGAATTGAACTGTTCCAAGGAAGGTCTCTCAAATGAGGAAGGCCAAAAGAGGTTGCAAGAAAGCAAGCTGCTCAAATTCTTGGGATTTATGTGGAACCCTCTCTCATGGGTCATGGAAGCCGCTGCCATAATGGCCATTGCATTGGCAAATGGAGGGGGTGAGCCACCGGACTGGCAGGACTTTGTGGGAATCGTGGTGTTGCTAGTTATAAACTCAACGATTAGTTTTATTGAAGAAAACAATGCTGGGAACGCTGCTGCAGCGCTTATGGCAGGGCTTGCTCCGAAAACGAAGGTTCTGAGAGATGGAAGGTGGTCAGAGGAGGAGGCATCTATACTGGTACCAGGAGATATAATAAGCATCAAATTGGGAGACATAATTCCAGCTGATGCTCGTCTGTTGGATGGAGACGCTCTCAAGATTGATCAGTCTGCACTCACTGGTGAGTCCTTGCCTGTTACTAGGAACCCTGGTGATGAAGTCTTCTCTGGCTCCACAGTCAAGCAAGGAGAGCTTGAGGCTGTTGTAATCGCTACTGGGGTCCACACCTTCTTCGGTAAGGCTGCTCATTTAGTCGACAGCACTAACCAAGTTGGCCATTTCCAAAAGGTCTTGACAGCCATTGGTAACTTCTGCATTTGCTCAATTGCTGTTGGCATGATCATTGAGATTGTTGTCATGTATCCAATTCAGCACCGCAAGTATAGGAGTGGAATTAACAATCTCTTGGTGCTTCTCATTGGAGGGATTCCCATTGCCATGCCAACAGTCTTGTCTGTCACAATGGCTATTGGTTCCCATAGGCTCTCCGAGCAAGGTGCTATCACCAAGAGGATGACAGCCATTGAGGAGATGGCTGGAATGGATGTTTTATGCAGTGACAAGACTGGCACTCTAACACTCAACAAGCTTACAGTAGACAAGACTTTGGTTGAGGTTTTCGCAAGAGATGCTGACAAGGATACAGTAATTTTGCTTGGAGCTAGGGCCTCCAGGGTGGAGAACCAAGATGCTATTGATGCTTGCATTGTTGGAATGTTGGGTGATCCGAAGGAGGCCAGAGATGGCGTTACAGAGGTGCATTTCCTTCCCTTTAATCCAGTGGACAAGCGCACAGCCATAACATACATAGACACTGAGGGTAACTGGCACCGAGTAAGCAAAGGTGCACCAGAGCAGATTATCGAACTTTGCAAGCTTCGGGAAGACGTGAAGAAGAAGGCTCTTTCCATCATTGATAAATTTGCTGATCGCGGTCTTCGTTCCCTTGCTGTTGCCAAACAAGAAGTGCCAGAAAAGAACAAGGAGAGTGCAGGAGGACCGTGGCAGTTTGTTGGTTTGTTGCCACTTTTTGATCCACCAAGGCATGACAGTGCTGAGACCATAAGGCGTGCTCTCAATCTGGGAGTGAACGTTAAGATGATTACTGGTGATCAACTAGCTATTGGTAAAGAAACTGGTCGCAGGCTTGGCATGGGAAGCAACATGTACCCTTCATCCTCTCTCCTTGGTGAGCACAAGGATGACTCCATTGCTGGCCTTCCAGTTGATGAACTTATTGAGAAGGCTGATGGCTTTGCTGGTGTCTTCCCTGAACACAAGTACGAGATTGTCAAGAGACTTCAGGAAAGGGAACACATATGTGGTATGACAGGAGATGGTGTCAACGATGCTCCTGCGCTCAAAAGAGCAGATATTGGAATTGCTGTGGCTGATGCAACCGATGCAGCTCGAGGTGCATCTGACATAGTCCTCACCGAGCCTGGCTTGAGTGTCATTGTGAGTGCAGTGTTGACAAGTAGAGCCATCTTCCAGAGAATGAAGAATTACACCATATATGCTGTTTCTATAACAATCCGTATAGTGCTAGGCTTTATGCTGCTTGCTCTCATCTGGAAGTTTGACTTCTCACCTTTTATGGTTTTGATCATTGCCATACTCAATGATGGCACCATCATGACCATTTCCAAGGACAGGGTGAAGCCATCTCCTGTGCCAGATTCCTGGAAGCTGAGAGAGATTTTTGTGACTGGGATTGTGCTTGGTGCCTACCTCGCTGTAATGACTGTTGTCTTCTTCTGGGCTGCTCATGCATCTAATTTCTTCTCGGACAAATTTGGCGTGAGATCCATCAGGGACAACCACACTGAACTCACAGCAGCTGTTTACCTTCAAGTGAGTATTGTAAGTCAGGCTCTCATCTTTGTTACACGGTCAAGGAGCTGGTCTTATGTTGAACGTCCTGGCATCTTTCTCATTGTTGCCTTTTTCATAGCACAGCTGATTGCCACGGTCATAGCTGTGTATGCAAACTGGGGCTTTGCAAAAATTAAAGGGATTGGATGGGGTTGGGCTGGTGTCATTTGGCTCTACAGCATTGTTTTCTACATACCCATGGATATAATTAAGTTCATCATCCGATATGCACTGACTGGGAAGGCATGGAATAATATAACTGAGAATAGGGTTGCTTTCACCACAAAGAAGGATTATGGAAAGGGAGAGAGAGAAGCACAATGGGCCGCAGCTCAACGCACATTGCATGGCCTGAATCCACCTGAAACGGAGGAAATGTTGAATGAAAAGAACAACTATAGGGAATTGTCTGAACTTGCAGAACAGGCCAGGAAGCGTGCCGAAGTTGCAAGGACAAGACAAACAAACATGGAAAATTGCTCCCACGCGCCCAAACTTGCTGTTAATCTTAAACACCTTCCTCCAATCGACCCCTTTCGAATCACCAACTCTTCCTCTAACTCTAAGGTTATCTTACCTATTTTTCTTTTCTTTTTTCACAATTGGGTATGTGCAAAGTTTGCTTCTTTCTTTTTGCAGGCTAAGTTGAACAATTCTTGTAGCAGAGCTGCTGCTAAAGCTGTAAAGCAAAATCCCAACCAGGGAATGAAGTTGGTTGCTTCGGATCAAGACATTGTCAAAAATCCCTCCTTGGGAATGGAAAACATTGTCGTTCAAGACACATCTTCAACTTCATGTAATCAAAAGATTGAGTCTTGTGGCAACACTACCTCTCCAACTCAGACAGAAGAAGGTATGAAGAAAGGAATTGCTAGGTCTACTTTGTACGAGATCTGCGCTGCGAACCGTTGGAAACCCCCAATATTTGAATGTTGCAAAGAGGAAGGCCCAAGTCATAAGAGAATGTATGTCTACATTGTGGTGTTTAAATAG 3261 0.4581 MGGLEDIKNEAVDLERIPVDEVFRELNCSKEGLSNEEGQKRLQESKLLKFLGFMWNPLSWVMEAAAIMAIALANGGGEPPDWQDFVGIVVLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGRWSEEEASILVPGDIISIKLGDIIPADARLLDGDALKIDQSALTGESLPVTRNPGDEVFSGSTVKQGELEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMIIEIVVMYPIQHRKYRSGINNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSEQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKTLVEVFARDADKDTVILLGARASRVENQDAIDACIVGMLGDPKEARDGVTEVHFLPFNPVDKRTAITYIDTEGNWHRVSKGAPEQIIELCKLREDVKKKALSIIDKFADRGLRSLAVAKQEVPEKNKESAGGPWQFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGSNMYPSSSLLGEHKDDSIAGLPVDELIEKADGFAGVFPEHKYEIVKRLQEREHICGMTGDGVNDAPALKRADIGIAVADATDAARGASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPVPDSWKLREIFVTGIVLGAYLAVMTVVFFWAAHASNFFSDKFGVRSIRDNHTELTAAVYLQVSIVSQALIFVTRSRSWSYVERPGIFLIVAFFIAQLIATVIAVYANWGFAKIKGIGWGWAGVIWLYSIVFYIPMDIIKFIIRYALTGKAWNNITENRVAFTTKKDYGKGEREAQWAAAQRTLHGLNPPETEEMLNEKNNYRELSELAEQARKRAEVARTRQTNMENCSHAPKLAVNLKHLPPIDPFRITNSSSNSKVILPIFLFFFHNWVCAKFASFFLQAKLNNSCSRAAAKAVKQNPNQGMKLVASDQDIVKNPSLGMENIVVQDTSSTSCNQKIESCGNTTSPTQTEEGMKKGIARSTLYEICAANRWKPPIFECCKEEGPSHKRMYVYIVVFK 1086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04371 1086 Pfam haloacid dehalogenase-like hydrolase 312 589 - -
Pumo4g04371 1086 NCBIfam plasma-membrane proton-efflux P-type ATPase 43 793 IPR006534 GO:0008553|GO:0016020|GO:0120029
Pumo4g04371 1086 SFLD p-type atpase 298 627 IPR044492 -
Pumo4g04371 1086 FunFam Plasma membrane ATPase 328 475 - -
Pumo4g04371 1086 Gene3D - 119 203 - -
Pumo4g04371 1086 SUPERFAMILY Calcium ATPase, transmembrane domain M 13 833 IPR023298 -
Pumo4g04371 1086 FunFam Plasma membrane ATPase 119 203 - -
Pumo4g04371 1086 Gene3D - 81 802 - -
Pumo4g04371 1086 Gene3D - 328 475 IPR023299 GO:0000166
Pumo4g04371 1086 FunFam ATPase 4 plasma membrane-type 561 802 - -
Pumo4g04371 1086 Coils Coil 882 909 - -
Pumo4g04371 1086 PRINTS P-type cation-transporting ATPase superfamily signature 166 180 - -
Pumo4g04371 1086 PRINTS P-type cation-transporting ATPase superfamily signature 316 330 - -
Pumo4g04371 1086 PRINTS P-type cation-transporting ATPase superfamily signature 598 610 - -
Pumo4g04371 1086 PRINTS P-type cation-transporting ATPase superfamily signature 492 502 - -
Pumo4g04371 1086 PRINTS P-type cation-transporting ATPase superfamily signature 470 481 - -
Pumo4g04371 1086 PRINTS P-type cation-transporting ATPase superfamily signature 575 594 - -
Pumo4g04371 1086 ProSitePatterns E1-E2 ATPases phosphorylation site. 318 324 IPR018303 -
Pumo4g04371 1086 Pfam E1-E2 ATPase 118 295 - -
Pumo4g04371 1086 PANTHER CALCIUM-TRANSPORTING ATPASE 16 870 - -
Pumo4g04371 1086 FunFam Plasma membrane ATPase 468 623 - -
Pumo4g04371 1086 CDD P-type_ATPase_H 32 828 IPR006534 GO:0008553|GO:0016020|GO:0120029
Pumo4g04371 1086 NCBIfam HAD-IC family P-type ATPase 550 660 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pumo4g04371 1086 NCBIfam HAD-IC family P-type ATPase 88 341 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pumo4g04371 1086 Gene3D - 1046 1086 - -
Pumo4g04371 1086 SUPERFAMILY HAD-like 312 622 IPR036412 -
Pumo4g04371 1086 SUPERFAMILY dsRNA-binding domain-like 1049 1085 - -
Pumo4g04371 1086 Gene3D - 887 915 - -
Pumo4g04371 1086 SUPERFAMILY Calcium ATPase, transduction domain A 119 216 IPR008250 -
Pumo4g04371 1086 Gene3D - 313 612 IPR023214 -
Pumo4g04371 1086 SMART Cation_ATPase_N_a_2 13 74 IPR004014 -
Pumo4g04371 1086 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1047 1084 - -
Pumo4g04371 1086 SFLD C1.7: P-type atpase like 298 627 - -
Pumo4g04371 1086 PRINTS H+-transporting ATPase (proton pump) signature 432 450 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pumo4g04371 1086 PRINTS H+-transporting ATPase (proton pump) signature 575 591 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pumo4g04371 1086 PRINTS H+-transporting ATPase (proton pump) signature 606 631 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pumo4g04371 1086 PRINTS H+-transporting ATPase (proton pump) signature 547 563 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pumo4g04371 1086 PRINTS H+-transporting ATPase (proton pump) signature 747 768 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04371 Pumo-Chr4 84731707 84739823 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04371 5 912 Primary Pumps ATPases AT1G80660 84.004 0.0 1566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04371 K01535 - gmx:100796240 1672.52