Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04367 ATGGAGCAATCATGGGAGAATTGGCCTCTTGGCATGGAAATGGATGATGATGATAGGGATCTGTTAGAAGAGTGCCAAACCGATGAAGAGGAGTTCCTGAGAGACATCCTGAGTCAACCGGCTTTTTCTTCAGAGAATGAAAGTCAACCCAGCTTTGTCCATGGGAGTGGGAGCAGTAGTTTATCTTTATCCTCAGATGAGATCGTAAACGCAGGGTCCAAAAGGGCGAGGACATACATTTTGTCTTTTGATAACTCTACCATAATACTACCAGCTACCCCTGAACCTGGGACACGCTCTTCCTCTTCTAAATCTAACTCCTCCACCAGAAAACGGACCCTGGAAAATCTCAACTTATTAGAACCAAAACCCCAAGCCCAAGCTGGAAAGAGGGGTAGAAGCGGTTCCCAGACTCTCGATCACATTATGGCCGAAAGAAAAAGGAGACAGGAACTCACCCAGAGGTTCATTGCACTTTCAGCTACTATCCCTGCCTTGAAGAAGATGGACAAGAGTTCTATACTTGGGGAAGCAATTAATTACGTGAAACAACTTCAAGAACGTGTGAGGGAGCTTGAAGAGAGAAACAGGAGAGGGAAAGAATCAATGATAATCCTGAAGAAGAGTGAAGATACATATAGTAACTCAAGAGGGAACGAAATGCTCCCGGATGTTGAAGCAAGAGTGATGGAGAATGAGGTACTGATTGAGATCCATTGTGAGAAGGAAGATGGGGTTGAGCTCAAAATATTGGACCACCTTGAAAATCTTCATCTCTCTGTCACCGCCACAAGCGTATTGCCCTTTGGGAATTCAACTCTTCTTGGCATCACTATTATCGCTCAGATGGGTGACGCGTACAAAATGAAGGTGAATGATCTAGTGAAAAAACTAAGGCAAGTGCTGTTGAATCACATGAACGCCAATGCCGATCCGTACTAG 942 0.4469 MEQSWENWPLGMEMDDDDRDLLEECQTDEEEFLRDILSQPAFSSENESQPSFVHGSGSSSLSLSSDEIVNAGSKRARTYILSFDNSTIILPATPEPGTRSSSSKSNSSTRKRTLENLNLLEPKPQAQAGKRGRSGSQTLDHIMAERKRRQELTQRFIALSATIPALKKMDKSSILGEAINYVKQLQERVRELEERNRRGKESMIILKKSEDTYSNSRGNEMLPDVEARVMENEVLIEIHCEKEDGVELKILDHLENLHLSVTATSVLPFGNSTLLGITIIAQMGDAYKMKVNDLVKKLRQVLLNHMNANADPY 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04367 313 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 136 185 IPR011598 GO:0046983
Pumo4g04367 313 Coils Coil 175 202 - -
Pumo4g04367 313 MobiDBLite consensus disorder prediction 43 64 - -
Pumo4g04367 313 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 133 208 IPR036638 GO:0046983
Pumo4g04367 313 Pfam Helix-loop-helix DNA-binding domain 141 186 IPR011598 GO:0046983
Pumo4g04367 313 Gene3D - 130 201 IPR036638 GO:0046983
Pumo4g04367 313 PANTHER BHLH TRANSCRIPTION FACTOR 20 305 - -
Pumo4g04367 313 MobiDBLite consensus disorder prediction 90 137 - -
Pumo4g04367 313 MobiDBLite consensus disorder prediction 90 115 - -
Pumo4g04367 313 SMART finulus 142 191 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04367 Pumo-Chr4 84682765 84684930 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04367 125 306 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 46.392 4.22e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo4g04367 HLH 2.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04367 - - gmx:100809888 362.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g04367 4 84682765 84684930 Pumo7g00118 7 1383625 1387376 PCT
Pumo7g00119 7 1412268 1420921 Pumo4g04367 4 84682765 84684930 PCT