Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04366 ATGGAGGATTGGTTATCTTATCTGGATATGGACGGCGACAAGTCCTTAACCTTCTTCAATGAATACCAAAAAACGAATTGTGGGGAGCATGAGCATCCAAATCCAACCACCTTGTACTGTTGTGCAAATGAAACACAAACTCGGTACTCTGTCTATTGTTCTTCGAAAAGAGGGTTGGGAAGGCCAAGCGAGGAAGGAAGAAAGAGGGAGACACGGGATCACATAATGTCCGAGAGAAAAAGGAGACAGCAAATGGCAGAGAGCTTCATAGCGCTTTCCGCTATTATACCTGGCTTGAAGAAGATAGACAAGGCTTCTGTACTGAGTGAAGCTATTAACTACGTGAAACAACTTCAAGGACGCATAGCTGTGCTGCAGGAAGAGTGTGAGAAGAAAAGTAATAGCAAGTCGATGATCTTTATTAAGAAGTGCCAATCTCATTCCGCATCATGTGAAAGTGAAACAGACTCTAATCACGTGCTCCCTGATGAAGTCGAAGTCGAAGCAATAGGCTTAGAGTTAGAGAGGGAAGTACTTATTAGAATCCTTTGTGAGAAACGAAAGGGCATCTTGCTCAAACTACTCACCTTACTTGAAAATCTACATGTTTCTATTCTCAGTAGCAGCGTACTGCCACTTGGAAAAAACACTCTCAACATTACCATTATTGCTCAGATGGGTGAGGAATACAACATGACAGGGGATGAATTGGTGAAAAAATTGACACAGGATCTTGTCAAGTTATATGAAGTGCCACTGTGA 762 0.4226 MEDWLSYLDMDGDKSLTFFNEYQKTNCGEHEHPNPTTLYCCANETQTRYSVYCSSKRGLGRPSEEGRKRETRDHIMSERKRRQQMAESFIALSAIIPGLKKIDKASVLSEAINYVKQLQGRIAVLQEECEKKSNSKSMIFIKKCQSHSASCESETDSNHVLPDEVEVEAIGLELEREVLIRILCEKRKGILLKLLTLLENLHVSILSSSVLPLGKNTLNITIIAQMGEEYNMTGDELVKKLTQDLVKLYEVPL 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04366 253 MobiDBLite consensus disorder prediction 56 80 - -
Pumo4g04366 253 Coils Coil 108 135 - -
Pumo4g04366 253 Pfam Helix-loop-helix DNA-binding domain 74 119 IPR011598 GO:0046983
Pumo4g04366 253 Gene3D - 62 134 IPR036638 GO:0046983
Pumo4g04366 253 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 72 133 IPR036638 GO:0046983
Pumo4g04366 253 PANTHER BHLH TRANSCRIPTION FACTOR 34 247 - -
Pumo4g04366 253 SMART finulus 75 124 IPR011598 GO:0046983
Pumo4g04366 253 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 69 118 IPR011598 GO:0046983
Pumo4g04366 253 ProSiteProfiles ACT domain profile. 179 253 IPR002912 -
Pumo4g04366 253 MobiDBLite consensus disorder prediction 60 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04366 Pumo-Chr4 84675920 84678889 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04366 19 241 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.084 1.59e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo4g04366 HLH 2.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04366 - - gmx:100809351 280.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g04366 4 84675920 84678889 Pumo7g00119 7 1412268 1420921 PCT