Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04364 ATGGAGAAGAAACCGTGGGGGAGTTGGTCTTCCGATATGGAAATGGATGATGAGGTTGTGAATGGAAGTTTGTGTCACACGAACCCCTTTGATGAAGAGTTCCTAAGAGATATTCTGCAGCAGCCACAAGAGGGCGTTGTTGGCGCTCCAGATCTTAATACTGTTGTTGGTGGTGGTGGTGGCAACAACTTAATGATGAAGAATAATACTAATAACTCATCAATCATGTCTCTATGTGCTGAAGACACTAAGCCAACCTTATTTCCAACCACTTATATACTGTCTTTCGACAAATCAGCTGCATTGTTACCAACTGATCCTGATCCTGAATTACCCAAAGATACTTTGCGTGATTTGTCCTCATCAAGGCCAACCAAGAAGCCTCGAAGCGCCTCTGAGTCACTGGATCACATCATGTCTGAGAGAAATAGGAGACAGGAGCTCACCAGGAAGTTCATAGCACTTGCAGCCACTATCCCTGGCTTGAAGAAGATGGACAAAGCCCATGTACTAAGAGAAGCTATCAATTACGTGAAACAACTGCAAGAACGTGTAGAAGAGCTAGAAGAAGATATCCAGAAGAACGGTGTAGAATCAGCAATAACCATAACAAGATCTCATCTCTGCATTGATGATGACACCAACAATGACGAATGCTATGGGCCCAATGAAGCACTTGCTGAAGTTGAAGCCAGAGTCTTAGGGAACGAAGTGTTAATCAAAATTCAGTGTGGCAAACAAAAGGGAATTCTGCTTAAAATAATGTCTCAGCTTGAACGTCTTCATCTCTACATATCCACTAGCAATGTCTTGCCATTTGGGAATACCCTTGACATCACCATCATTGCTCAGGTTTTGGTATTGAGATTTGAATGCAGGCGCATAGTACGTGTAGGTGGAGGAAGAGACAAGAGAAGAATGAGGAGAAAGGGTGTGGGAACGACGGGAGTTAAGAGTTGGATGGTGGTGTCGGAGACAGGGCATGCACGCCTAGAAGATGTTGGAAAACATTCTGTAATGCGACGAACTGGGTTGCCCGCGCGTGACCTTAGGGTCCTCGATCCCGTTCTGTCACACCCTTCTTCCATCCTAGGACGTGAAAGAGCCATTGTTGTCAACTTGGAACATGTCAAAGCCATCATCACTGCCTCCGAGGTCCTCATGATCAACTCCTCCAACCCTTTCTTTCTTTCCTTCCTTCAACTTCTTCATACCCGTCTTACCAATCAAATTCCCTCCTCGATGAGCAATGACATGGATGGTGGTTACGAAGAAAAACCTCTACCAAAAGATTCCCGAAACGGTTCACCTGTGAAAACATCTGAGGACTCTCATGCCTTTCATGTAAGAGCAGATAGCCCTAAGATGAGTGCAGAGATTGTGACAGGATCACCAACTCCTAAGCCGTTACCTTTTGAGTTTAAAGTACTTGAGGCATGTATTGAATCTTCTTGCAGGTGCCTTGAATCTGAGACTTCAACATTGGAGGTAGAGGCTTACCCAGCTTTAGATGAATTGACCTCTCAACTTAGCACACTCAATCTTGAACGTGTAAGACAGATCAAGAGTCGTTTGGTTGCACTTTCCGGTCGTGTGCAGAAGGTCGCAGATGAACTGGAACATTTGTTGGACGATGATAATGACATGGCTGAAATGTATTTGACAGAAAAGCTTAATGCTCGTTTATATGATCAGACATCATTAAAAGAAGGGTACAATTCCGAATTTGAAGATAATGATCAAAGTGATGAATCAAATTCAGAAAAGTTTGACAGATTCCTTGGTCCTAAACTTGACGTTGAGGAATTGGAGATGCTTCTTGAAGCATATTTTGCTCAGACAAATGGAATCTTGCAAAGATTGTCAAGTTTGAGTGAGTACGTGGATGACACGGAGGACTACATCAACATAATGTTAGATGATAAGCAAAATGAGCTTCTGCAGGCAGCAATAATATTCGAGACCGTAAACATGATACTTAATGCTGGTATTGTGGTGGTAGGATTGTTTGGCATGAATATTCACATTGACCTCTTTGATGGTAAACCTCGTCAATTTTGGGCTACAGCTTGGGGTACATTGGGAGGATGTATACTTCTATTCCTTGTATGTTTGTGGTGGGGGAAGAAAAGATATCTTCTCTCTCAATAG 2151 0.431 MEKKPWGSWSSDMEMDDEVVNGSLCHTNPFDEEFLRDILQQPQEGVVGAPDLNTVVGGGGGNNLMMKNNTNNSSIMSLCAEDTKPTLFPTTYILSFDKSAALLPTDPDPELPKDTLRDLSSSRPTKKPRSASESLDHIMSERNRRQELTRKFIALAATIPGLKKMDKAHVLREAINYVKQLQERVEELEEDIQKNGVESAITITRSHLCIDDDTNNDECYGPNEALAEVEARVLGNEVLIKIQCGKQKGILLKIMSQLERLHLYISTSNVLPFGNTLDITIIAQVLVLRFECRRIVRVGGGRDKRRMRRKGVGTTGVKSWMVVSETGHARLEDVGKHSVMRRTGLPARDLRVLDPVLSHPSSILGRERAIVVNLEHVKAIITASEVLMINSSNPFFLSFLQLLHTRLTNQIPSSMSNDMDGGYEEKPLPKDSRNGSPVKTSEDSHAFHVRADSPKMSAEIVTGSPTPKPLPFEFKVLEACIESSCRCLESETSTLEVEAYPALDELTSQLSTLNLERVRQIKSRLVALSGRVQKVADELEHLLDDDNDMAEMYLTEKLNARLYDQTSLKEGYNSEFEDNDQSDESNSEKFDRFLGPKLDVEELEMLLEAYFAQTNGILQRLSSLSEYVDDTEDYINIMLDDKQNELLQAAIIFETVNMILNAGIVVVGLFGMNIHIDLFDGKPRQFWATAWGTLGGCILLFLVCLWWGKKRYLLSQ 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04364 716 MobiDBLite consensus disorder prediction 423 449 - -
Pumo4g04364 716 MobiDBLite consensus disorder prediction 103 140 - -
Pumo4g04364 716 CDD Mrs2_Mfm1p-like 320 711 IPR039204 -
Pumo4g04364 716 FunFam Magnesium transporter MRS2-E 425 646 - -
Pumo4g04364 716 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 302 712 IPR039204 -
Pumo4g04364 716 Pfam Helix-loop-helix DNA-binding domain 137 182 IPR011598 GO:0046983
Pumo4g04364 716 FunFam Magnesium transporter MRS2-1 305 391 - -
Pumo4g04364 716 Gene3D - 124 196 IPR036638 GO:0046983
Pumo4g04364 716 SMART finulus 138 187 IPR011598 GO:0046983
Pumo4g04364 716 Coils Coil 171 198 - -
Pumo4g04364 716 Gene3D Magnesium transport protein CorA, transmembrane region 442 646 - -
Pumo4g04364 716 Gene3D - 308 392 - -
Pumo4g04364 716 Pfam CorA-like Mg2+ transporter protein 602 709 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Pumo4g04364 716 MobiDBLite consensus disorder prediction 413 449 - -
Pumo4g04364 716 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 132 181 IPR011598 GO:0046983
Pumo4g04364 716 MobiDBLite consensus disorder prediction 110 140 - -
Pumo4g04364 716 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 137 199 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04364 Pumo-Chr4 84647240 84655904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04364 319 714 MRS2 Gene Family AT3G19640 47.630 4.62e-120 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo4g04364 CorA 6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04364 - K16075 gmx:100808805 712.99