Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04363 ATGTGGAGTTCAACTTCAAGCACAGCGATTGCAGCACCCTCCTCCGACGAGGAACCTAGCGAATCCTCTTCGTCCTCCTTCTCCACCTCTCTCTTCAATTTCTCTTCTGGAAACCCTAGAATCGAGGAGACCCGTGGCCTCATGCATCTCTTCCCCGACGATACTCCTTCTACTCTTCCAGTTGGACGGAAGCCTCTCGTTTGTGTTGTCGGCGTCCCAAATCACATGACCTATGCGGATTTCTGCCAGTTCTGTGGTTCGTTCATTCAGCACATGCTAGAGATGCGCATTGTCAGGTATGCAATATGCATGCTCACAATCACAATCACATCAATTCTCATTCACACTGATGTTTGTTTCCTTAGGATGGATGGGATGGAAGATCAGTACAGTGTTTTAATTCGCTTTGACGATCAAGACTCCACCGACAGCTTCTACAAGCACTACAATGGCCGCCGTTTCTCTTCTCTCGAGGTTGAGGTTTGCCGTGTTCTTTTCACATTAGACGTGCAGTACACTGGCTCCATTGAACATGCACAACCCTCCAATGCTAGTTCAACTGAACAGCCTACTTGTCCTGTTTGCCTTGAGCGATTAGATCAGGACACCAGTGGAATTCTTACAACTATATGCAACCATTCTTTCCATTGTTCCTGTATTTCAAAATGGGCAGATTCTTCTTGTCCTGTATGCCGCTATTGCCAGCAGCAAGCTGAAAAATCTATATGTTTTGTTTGTCAAACCACTGAGAACCTGTGGATATGTGTTATATGTGGGTATGTTGGCTGCGGAAGATACAAGGGAGGACATGCTATTATACACTGGAAAGAGACACAACATTGCTATTCCCTAGAACTGGAAACCAAACGTGTGTGGGATTATGTGGGAGACAACTATGTTCATAGACTTATTCAGTCCAAAACTGATGGGAAGTTGGTGGAGCTGAACACTCACTGTGCGCACGCAGACAATGGATGTGGAAGTTGCAGCTGTGAAGATAATGCCATGAGTGAGGCTATACTTAATAGTAAAGTTGAAGCTATTGTCAATGAGTACAATGAATTGCTTGCTACTCAACTTGAAAACCAAAAAATATATTTTGAATCCTTATTACAAGAAGTAAAAGAAGAATCTGAAAGAAAAATTTCCAAAGCTGTTCAGAAGGCTATCAGTCTTAAACAGCAGAAGATTCAGTCCAAGATTGACAGATGTAAGAAAGAGAAGAAATTTCTGGATGATCTTAATGAGAATCTTGTGAAAAATGAGGACATTTGGAAGGCAAAGATAGTTGAGATTGAAGAGAGGGAGAAAAAAGCTATGAGACTGATGGATGATAGAGTAGCGGACCTGGAAAAGCAGCTTAGAGACCTCATGGTTTGTCTTGAGGGTGGGAAGACGGTAGAACAGCTGCCCGTTTCAGATGAGACTAAAGAAGGGACAGTCTTTGACAAATCAAAAGAATCCTCGTCAACTAATGGCTCTGAGCTGGTAGGAAGAGACGCATAA 1506 0.4329 MWSSTSSTAIAAPSSDEEPSESSSSSFSTSLFNFSSGNPRIEETRGLMHLFPDDTPSTLPVGRKPLVCVVGVPNHMTYADFCQFCGSFIQHMLEMRIVRYAICMLTITITSILIHTDVCFLRMDGMEDQYSVLIRFDDQDSTDSFYKHYNGRRFSSLEVEVCRVLFTLDVQYTGSIEHAQPSNASSTEQPTCPVCLERLDQDTSGILTTICNHSFHCSCISKWADSSCPVCRYCQQQAEKSICFVCQTTENLWICVICGYVGCGRYKGGHAIIHWKETQHCYSLELETKRVWDYVGDNYVHRLIQSKTDGKLVELNTHCAHADNGCGSCSCEDNAMSEAILNSKVEAIVNEYNELLATQLENQKIYFESLLQEVKEESERKISKAVQKAISLKQQKIQSKIDRCKKEKKFLDDLNENLVKNEDIWKAKIVEIEEREKKAMRLMDDRVADLEKQLRDLMVCLEGGKTVEQLPVSDETKEGTVFDKSKESSSTNGSELVGRDA 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04363 501 CDD RING-H2_BRAP2 190 233 IPR047243 -
Pumo4g04363 501 ProSiteProfiles Zinc finger RING-type profile. 192 232 IPR001841 -
Pumo4g04363 501 MobiDBLite consensus disorder prediction 472 501 - -
Pumo4g04363 501 PANTHER BRCA1-ASSOCIATED PROTEIN 9 492 - -
Pumo4g04363 501 MobiDBLite consensus disorder prediction 1 27 - -
Pumo4g04363 501 Pfam Zn-finger in ubiquitin-hydrolases and other protein 243 302 IPR001607 GO:0008270
Pumo4g04363 501 SMART Zf_UBP_1 242 291 IPR001607 GO:0008270
Pumo4g04363 501 Pfam Ring finger domain 191 232 IPR001841 -
Pumo4g04363 501 SUPERFAMILY RING/U-box 208 307 - -
Pumo4g04363 501 Coils Coil 433 453 - -
Pumo4g04363 501 CDD RRM_BRAP2_like 67 171 - -
Pumo4g04363 501 SMART ring_2 192 231 IPR001841 -
Pumo4g04363 501 Pfam BRCA1-associated protein 2 117 179 IPR011422 -
Pumo4g04363 501 Pfam BRCA1-associated protein 2 60 99 IPR011422 -
Pumo4g04363 501 Coils Coil 401 421 - -
Pumo4g04363 501 ProSiteProfiles Zinc finger UBP-type profile. 226 319 IPR001607 GO:0008270
Pumo4g04363 501 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 175 234 IPR013083 -
Pumo4g04363 501 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 235 316 IPR013083 -
Pumo4g04363 501 Coils Coil 357 395 - -
Pumo4g04363 501 MobiDBLite consensus disorder prediction 485 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04363 Pumo-Chr4 84642524 84646004 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04363 188 232 C3H Transcription Factor Family AT1G72220 48.936 2.09e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04363 K10632 - gmx:100794688 879.011