Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04360 ATGGATAACAATAATTGGAGACCTAACCAAGGCACTGAAGCCAATATGGATACTAGTGATTGGAGAGGTGGACTACAACATGAGTCACGCCAAAGAATTGTCAACAAAATAATGGACACGTTAGAAAGACATCTTCCTGTTTCTGGTCCAGAGGGATTGCATGAACTTCAGAAGATTGCTCAGAGGTTTGAAGAGAAGATTTTTACTACTGCAACAGGCCCGTCTGATTATCTACGGAAAATATCTTTGAAGATGCTTACAATGGAGACTAAATCCCAGGGCTCCATTGCCCCCAACTTACCTCCAAATCAAGGTATTAATATGGAAGATATTCCTGAAGAAGCTGTCTGCAGAATTTGTTTGCTTGAATTGAGAGGTGCTAATACCCTTAAAATGGAGTGCAGCTGCAAAGGTGAACTTGCATTGCTGCACCTAGAGTGTGCAGTTAAATGGTTTAACATTAAAGGCAACAGAACATGTGATGTGTGCAATCGGGAGGTTCAGAATCTACTTGTCGGTGATGTGTATGCTAGGGCACAAGATGCTGAATCTGAGGAGGAAGATGAAGAAGAGGAAGATGAGGAGGAGGAAGAAGAGGATGAAGAAATTGAAGACATGGATGAGGCCTAG 630 0.4222 MDNNNWRPNQGTEANMDTSDWRGGLQHESRQRIVNKIMDTLERHLPVSGPEGLHELQKIAQRFEEKIFTTATGPSDYLRKISLKMLTMETKSQGSIAPNLPPNQGINMEDIPEEAVCRICLLELRGANTLKMECSCKGELALLHLECAVKWFNIKGNRTCDVCNREVQNLLVGDVYARAQDAESEEEDEEEEDEEEEEEDEEIEDMDEA 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04360 209 MobiDBLite consensus disorder prediction 181 209 - -
Pumo4g04360 209 SMART ringv_2 116 164 IPR011016 GO:0008270
Pumo4g04360 209 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 172 IPR013083 -
Pumo4g04360 209 PANTHER OS02G0165000 PROTEIN 103 189 - -
Pumo4g04360 209 MobiDBLite consensus disorder prediction 176 209 - -
Pumo4g04360 209 CDD RING_CH-C4HC3_MARCH 117 164 - -
Pumo4g04360 209 Coils Coil 176 209 - -
Pumo4g04360 209 SUPERFAMILY RING/U-box 113 167 - -
Pumo4g04360 209 MobiDBLite consensus disorder prediction 1 19 - -
Pumo4g04360 209 Pfam RING-variant domain 117 163 IPR011016 GO:0008270
Pumo4g04360 209 SUPERFAMILY Kix domain of CBP (creb binding protein) 18 91 IPR036529 GO:0003712|GO:0006355
Pumo4g04360 209 Gene3D Coactivator CBP, KIX domain 20 97 IPR036529 GO:0003712|GO:0006355
Pumo4g04360 209 FunFam Mediator of RNA polymerase II transcription subunit 15a 20 98 - -
Pumo4g04360 209 ProSiteProfiles Zinc finger RING-CH-type profile. 109 170 IPR011016 GO:0008270
Pumo4g04360 209 MobiDBLite consensus disorder prediction 1 23 - -
Pumo4g04360 209 Pfam KIX domain 19 95 IPR036546 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04360 Pumo-Chr4 84628091 84632919 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04360 112 170 C3H Transcription Factor Family AT2G37950 44.262 5.19e-13 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04360 K14972 - gmx:100783762 200.29