Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04349 ATGGACACTACCGACTTTAGTGAACTTAAGCTGAAAGACATATCACCATTTGCTCAACCCTTTTTCGTGGAAGCACAAGTCATTCGTGTTTGGAGCTGTGGTGATGATTGTTTATTAGGGGCAAATGCTGGACTTGGAATGTTGGTGCTAGATTTAGAGGGTTGTAATGTCCAGGTTTTTGTTACTTCCCATGTTGCCCGCTTTCTTGACCTTGATATCGTAGAAGGTGGTGTATATAGGTTCTATAACCTGGATGTTGTATGCAACCATGGTATTTGTGTTGTCAGTAACCATCATGACAAATTTGTGATGACTATTAGATCTTCTGTGTCGTTTGTTTCTTACGAAACGTTAACAGGAGATGACCTTTCTCCTCTACCATATTTTGTTGGGGTGATTACAGGAATCTCAGATGATCGAGAATACTTTGTCAATGGAAAGTCTATCCGAAAGATCTATGTTGAGTTGACTGATGAAACTGGTCAAATTGAGTTTACTCTGACTGGTGACCACGTCCAAAGCTTGAAATGTTTGTTAACAAATGAGGCTACGGTTCCTTATTTATTAGTTCAATTTGTCAAGGTTATTCCATTTGGAAGTATTGCATTTGGACGAATTTCAATTGAGGTTGTGCCCAGAATTACTAAAATTATGTACAATCCTGATTATCCGGAATTGACCGATTTTAAGGCAAGATACTCTATATGGGTCAAAATTGCTGATGAGACTGGTAGTGCACTTGTCATGCTATCTGATGCCGATGTTGAGAAGATACTGAATATTCGTTGTAGTGAACTTCTTTGTAACCATCAGACGAAGGTTAAGAAGCTTGAACAAGATTATATCTATCACTGGTCTAGAAAGATATATACTACCAATTCCAGCAATGAAAGAGATGCATGCTTCTCAAGTGAACAGTCTTCTTCTGAATCTACAATTGCCTGCTTAGAAGTTGACGAGGTTGACAATGAAGATTCCATTTCCCTCTCCCTTGGCCCTCTTAGCCTGCACCACAAATCCAAAGTCATCTATAACCCAAAACACTCTTCTACTATGCGTGCTCGCCACCCGCAAAACCCTACCTCCGATGACCTGAGTGGTGTAACAGTTGCTCTCCACATTGGCCTTCCCACCACCACCGCAACCAAACATTCTTTCTCTCCAATTCACTGTCAATATTGGATCCCTACTCCTCAACAAATCCTTATTGGGCTCACCCAGTTTTCTTGGACTGTCTCGTCCATCGGAAATTTCCAAGGTAAAAAGATGAATATGAAGAACATGAAAGTTCCGAACGTTCCAGGCGGTGGTGCGGCCTCTGCGCTACTGAAGCTTGGGATTGTTAGGGGAATTGGTTTGTATGCAGCTGCTAATGGTCTCTACAATGTTGAAGGAGGGCACCGAGCTATTGTTTTCAACTGTCTAGTCGGTGTCAAAGACAAGGTCTATCCTAAAGGGGCACACTTTATAATTCTGTGGTTTGAGAGGCCAATTATCTACGATGTCCCTGTGGTTGCCCAGTACAATGCCAGCCAGCTTATTACTCAGCGAGAGGCTGTTAGTCGGGAAATCTGGAAGATTCTGACTGAGAGGGCAGCTAACTTCAATATTGCCCTTGATGATGTGTCAATTACTAGTCTAACTTTTGGCAAGGAGTTTACTGCTGCAATTGAAGCTAAGCAGGTAGTTGCACAAGAAGCTGAGAGGGCTAAATTTGTTGTGGAAAAAGTTGAGCAAGACAAGAGAAGTGTTGTAATTAGAGCACAGGGTGAAGCAAAAAGTGCCCAACTGATTGGGCAAGCTATCGCCAACAATCCAGCATTTATCACACTGAGGAAGATAGAAGCCGCAAGAGAGATTGCACATACTATATCAAACGCGGCAAACAAGGTTTACCCGAATTCAGATGATCTGTTGTTGAATCTTCAGGAGATGAATTTGGAGCTAGGCAGAAAGTGA 1959 0.4206 MDTTDFSELKLKDISPFAQPFFVEAQVIRVWSCGDDCLLGANAGLGMLVLDLEGCNVQVFVTSHVARFLDLDIVEGGVYRFYNLDVVCNHGICVVSNHHDKFVMTIRSSVSFVSYETLTGDDLSPLPYFVGVITGISDDREYFVNGKSIRKIYVELTDETGQIEFTLTGDHVQSLKCLLTNEATVPYLLVQFVKVIPFGSIAFGRISIEVVPRITKIMYNPDYPELTDFKARYSIWVKIADETGSALVMLSDADVEKILNIRCSELLCNHQTKVKKLEQDYIYHWSRKIYTTNSSNERDACFSSEQSSSESTIACLEVDEVDNEDSISLSLGPLSLHHKSKVIYNPKHSSTMRARHPQNPTSDDLSGVTVALHIGLPTTTATKHSFSPIHCQYWIPTPQQILIGLTQFSWTVSSIGNFQGKKMNMKNMKVPNVPGGGAASALLKLGIVRGIGLYAAANGLYNVEGGHRAIVFNCLVGVKDKVYPKGAHFIILWFERPIIYDVPVVAQYNASQLITQREAVSREIWKILTERAANFNIALDDVSITSLTFGKEFTAAIEAKQVVAQEAERAKFVVEKVEQDKRSVVIRAQGEAKSAQLIGQAIANNPAFITLRKIEAAREIAHTISNAANKVYPNSDDLLLNLQEMNLELGRK 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04349 652 CDD SPFH_prohibitin 460 595 IPR000163 GO:0016020
Pumo4g04349 652 SUPERFAMILY Band 7/SPFH domain 504 567 IPR036013 -
Pumo4g04349 652 PANTHER PROHIBITIN 423 502 IPR000163 GO:0016020
Pumo4g04349 652 Gene3D - 109 235 IPR012340 -
Pumo4g04349 652 Gene3D Band 7 domain 502 562 IPR036013 -
Pumo4g04349 652 SUPERFAMILY Nucleic acid-binding proteins 111 239 IPR012340 -
Pumo4g04349 652 PRINTS Prohibitin signature 556 579 IPR000163 GO:0016020
Pumo4g04349 652 PRINTS Prohibitin signature 579 595 IPR000163 GO:0016020
Pumo4g04349 652 PRINTS Prohibitin signature 508 524 IPR000163 GO:0016020
Pumo4g04349 652 PRINTS Prohibitin signature 531 550 IPR000163 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04349 Pumo-Chr4 84486349 84492299 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04349 323 462 C2H2 Transcription Factor Family AT1G13290 32.258 1.31e-09 58.2