Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04340 ATGGCCGTTACATCCCTCTCTCTGCTCCCACCCTCCACTTGTCCCTGCTTCTGTGGCACCGTCCACCTCCGCTCCCACAACAGCTTCATTTCCATCCATTCTCCTTCTCCCTTCCCTTCCTTCTCCTCAATTTCAATTCCCACACACTCTCCCACGCGCCGCCGCTTTCATACTGTCCTCGCCGCTTCCTCCGACTACTATTCCACTCTCGGAGTCCCCAAATCCGCCTCCGGCAAGGAAATCAAAGCCGCCTATCGAAGGTTAGCTCGTCAGTACCATCCTGACGTGAATAAGGAGCCCGGGGCAACTGAAAAGTTCAAAGAGATTAGTGCTGCCTATGAGGTGCTATCAGATGATAAAAAGAGGGCCTTATATGATCAATATGGCGAGGCAGGAGTTAAGAGTGCAGTCGGAGGAGGGTCAAGTGCCTATACGACAAATCCATTTGATTTATTTGAGACATTTTTTGGGCCAAGCATGGGTGGCTTTGGTGGCATGGATCCAACTGGATTTGGAACTCGTCGTCGTAGTACCGTTACTAAGGGTGAAGACATCCGGTATGATTTTTCCTTGGAGTTTTCTGAGGCAATTTTTGGAACAGAGAAAGAATTCGAGCTTTCTCATTTGGAAACGTGTGAAGTCTGTACTGGTACTGGAGCAAAGTTAGGCTCCAAGATGAGAGTATGTTCAACTTGTGGTGGAAGGGGTCAGGTGATGAGGACTGAACAAACACCTTTTGGGTTGTTCTCACAGGTTTCAGTATGTCCAAACTGTGGAGGGGATGGTGAAGTCATATCTGAATATTGCCGTAAATGCAATGGTGAAGGACGAATACGGGTTAAGAAAAATATTAAAGTTAAAGTTCCTCCTGGTGTTAGCTCAGGCAGTATTCTAAGAGTTACAGGGGAGGGTGATGCTGGACCAAGAGGGGGCCCTCCAGGAGATCTTTATGTATATCTTGATGTGCAAGAGATACCTGGAATTCAAAGAGATGACATTAATCTCTGCTCAACAATATCAATCAGTTATCTAGATGCTATACTGGGGTCTGTTGTCAAGGTAAAGACAGTTGAAGGCATTTCGGAACTACAAATACCTGCTGGTACCCAACCTGGAGATGTCCTCGTCCTTGCAAGGAAAGGTGTACCAAAATTAAATAAACCATCAATACGTGGTGACCACTTATTTACAGTTAAAGTTACAATACCAAAACGTATTAGTACAAAGGAGCGTGAGTTGCTTGAAGAACTTGCTTCTCTAGGTGACACAAGCAGACGTTCAAAACCCCGTCCCAGAACTCACTCTTCCACAGATGGTACAGAAAGTCCTGCAGCTCAAAAGGATGAAAGTACAACAGCAACAGTTGAAGAAAAAACTGAAAAATCAGAAGACGAAAACGATGTATGGAATAAATTGAAGGACTTTGCTGGATCTGTGGCAAATGGAGCTTTAAAGTGGTTTAAAGATAATCTCTAG 1476 0.4512 MAVTSLSLLPPSTCPCFCGTVHLRSHNSFISIHSPSPFPSFSSISIPTHSPTRRRFHTVLAASSDYYSTLGVPKSASGKEIKAAYRRLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRALYDQYGEAGVKSAVGGGSSAYTTNPFDLFETFFGPSMGGFGGMDPTGFGTRRRSTVTKGEDIRYDFSLEFSEAIFGTEKEFELSHLETCEVCTGTGAKLGSKMRVCSTCGGRGQVMRTEQTPFGLFSQVSVCPNCGGDGEVISEYCRKCNGEGRIRVKKNIKVKVPPGVSSGSILRVTGEGDAGPRGGPPGDLYVYLDVQEIPGIQRDDINLCSTISISYLDAILGSVVKVKTVEGISELQIPAGTQPGDVLVLARKGVPKLNKPSIRGDHLFTVKVTIPKRISTKERELLEELASLGDTSRRSKPRPRTHSSTDGTESPAAQKDESTTATVEEKTEKSEDENDVWNKLKDFAGSVANGALKWFKDNL 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04340 491 CDD DnaJ 65 118 IPR001623 -
Pumo4g04340 491 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 199 279 IPR036410 -
Pumo4g04340 491 ProSiteProfiles Zinc finger CR-type profile. 199 281 IPR001305 GO:0031072|GO:0051082
Pumo4g04340 491 MobiDBLite consensus disorder prediction 451 469 - -
Pumo4g04340 491 FunFam Putative Mitochondrial DnaJ chaperone 271 318 - -
Pumo4g04340 491 SMART dnaj_3 64 121 IPR001623 -
Pumo4g04340 491 MobiDBLite consensus disorder prediction 418 435 - -
Pumo4g04340 491 Gene3D - 212 276 - -
Pumo4g04340 491 Gene3D DnaJ domain 62 166 IPR036869 -
Pumo4g04340 491 Gene3D - 328 420 - -
Pumo4g04340 491 MobiDBLite consensus disorder prediction 418 469 - -
Pumo4g04340 491 Gene3D - 182 318 - -
Pumo4g04340 491 FunFam Molecular chaperone Hsp40/DnaJ family protein 328 420 - -
Pumo4g04340 491 FunFam Chaperone protein dnaJ A6 chloroplastic 212 276 - -
Pumo4g04340 491 FunFam Chaperone protein dnaJ A6 chloroplastic 62 168 - -
Pumo4g04340 491 Pfam DnaJ central domain 212 276 IPR001305 GO:0031072|GO:0051082
Pumo4g04340 491 Pfam DnaJ C terminal domain 185 403 IPR002939 -
Pumo4g04340 491 SUPERFAMILY HSP40/DnaJ peptide-binding domain 180 323 IPR008971 GO:0006457|GO:0051082
Pumo4g04340 491 CDD DnaJ_zf 212 276 IPR001305 GO:0031072|GO:0051082
Pumo4g04340 491 MobiDBLite consensus disorder prediction 436 450 - -
Pumo4g04340 491 SUPERFAMILY Chaperone J-domain 61 171 IPR036869 -
Pumo4g04340 491 ProSiteProfiles dnaJ domain profile. 65 129 IPR001623 -
Pumo4g04340 491 CDD DnaJ_C 183 406 - -
Pumo4g04340 491 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 36 428 - -
Pumo4g04340 491 SUPERFAMILY HSP40/DnaJ peptide-binding domain 329 414 IPR008971 GO:0006457|GO:0051082
Pumo4g04340 491 ProSitePatterns Nt-dnaJ domain signature. 106 125 IPR018253 -
Pumo4g04340 491 PRINTS DnaJ domain signature 101 121 IPR001623 -
Pumo4g04340 491 PRINTS DnaJ domain signature 121 140 IPR001623 -
Pumo4g04340 491 PRINTS DnaJ domain signature 85 100 IPR001623 -
Pumo4g04340 491 PRINTS DnaJ domain signature 67 85 IPR001623 -
Pumo4g04340 491 NCBIfam molecular chaperone DnaJ 65 419 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Pumo4g04340 491 Hamap Chaperone protein DnaJ [dnaJ]. 62 475 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Pumo4g04340 491 Pfam DnaJ domain 65 126 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04340 Pumo-Chr4 84387632 84400629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04340 66 172 C2H2 Transcription Factor Family AT1G74250 38.596 8.56e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04340 K03686 - gmx:100798567 869.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g04340 4 84387632 84400629 Pumo4g04340 4 84387632 84400629 ECH