Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04330 ATGGGCATATTCAGATGTGGGACCTTGTTTTTCTGTGTGCTCCTTTTCTTTAGAACCTGCTGCCTGGCAAAAGATCAACATATTAGTCAGATATATCCTGGCTTCAGTGCATCTCAGCCTGATTGGAGAGACCATAATGGTTTTTTCTTGCTATCCAACAGCTCAGCTTTCGCTTTTGGATTCTTTACTACTCTTGATGTTTCATCGTTTGTTTTAGTTGTCATGCACTTAAGCAGCTTCAAAGTGGTTTGGACTGCCAACAGAGGCTTACTCGTTGGGACTTCTGATAAATTTGTGTTTGACCGTGATGGGAATGCATATTTGGGAAGTGGGAATGGCGTAGTTTGGGCAACAAATACAACAGGACAAAAAGTAAGATCCATGGAATTGCTTGACTCAGGGAATTTGGTGTTGCTTGGGGAAAATGGGACAGCTATTTGGCAAAGTTTTAGCCATCCCACTGATACTCTTTTGCCCGGACAAGCCTTTGTGGAAGAAATGACACTCAAAAGCTTCCACAACAGCTTGAACTTGTGTCATTTTCTTAGTTATAAGGCAGGTGATTTGGTTCTCTATGCAGGATATGAAACTCCACAAGTGTACTGGTCCCTATCAGGAGAACAAGCTCAGGGAAGCTCAAAAAATAACACTGGTAAGGTTCACTCTGCGTCTTTGGTGTCCAATTCATTGAGTTTTTTTGACATAAATAGAGCTTTGCTGTGGAAAGTTGTCTTCTCTGAGCACTCAGATCCCAAGTCATTGTGGGCTGCTACCTTGGACCCAACTGGTGCAATCACTTTTTATGATCTTAACAAAGGGAGGGCTCCAAACCCTGAGGCAGTTAAGGTACCACAAGACCCTTGTGGCATTCCTCAGCCTTGTGATCCTTATTATGTTTGCTTCTTTGAAAACTGGTGCATCTGCCCCAAACTTCTCAGATCTCGTTTTAATTGCAAACCTCCCAACATCTCCACCTGTTCTAGGAGTTCAACAGAACTTTTATATGTTGGTGAAGAGCTTGATTATTTTGCTCTCAAGTACACTGTTCCGGTTTCAAAATCAAACCTGGATGCTTGCAAAGAGACTTGTTTAGGAAACTGTTCATGCCTTGTGCTTTTCTTTGAAAACAGTACCGGAAGATGCTTTCATTTTGATCAGACTGGGAGTTTCCAACGCTATAAGAGGGGCGCCGGTGGCGGTGGTTATGTTTCATTCATGAAGGTCTCCATTAGTAGTGATGATGGACATGGCAACAAAAATGGAAGGAATGACACGGTGCTAGTTGTTGTCATAGTTGTTCTCACAGTTCTGGTTATAGTTGGTCTTATAACAGGATTCTGGTACTTCTACAAGAGGAAGAAGAATGTTGCTAAGTATCCTCAAGATGAGTTGGATGAAGATGATGATTTCTTGGACAGTCTCTCTGGGATGCCTGCACGTTTTACTTTTGCTGCTCTTTGTAGAGCAACTAAGGACTTTTCCACAAAAATTGGGGAAGGAGGTTTCGGCTCAGTGTATTTAGGTGTGCTTGATGATGGCACCCAGTTGGCTGTGAAAAAATTGGAAGGTGTTGGACAAGGTGCAAAAGAGTTTAAAGCAGAAGTGTCCATAATTGGAAGTATTCATCATGTTCATCTGGTCAAGCTCAAAGGGTTTTGTGCTGAGGGTCCTCATCGCCTTCTTGTCTATGAATACATGGCAAGGGGTTCTTTGGACAAATGGATCTTCAAGAACAGTGAGAACACCTTCTTGTTGAACTGGGACACAAGGTACAACATTGCAATAGGCACGGCAAAGGGATTGGCCTATCTCCATGAGGAGTGTGAAGTGAGGATTATCCACTGTGATATTAAGCCACAAAATGTTCTTCTTGATGATAACTTCACGGCTAAGGTTTCAGATTTTGGATTGGCTAAGCTAATGAGCCGTGAGCAGAGCCATGTGTTCACAACTCTAAGGGGCACAAGAGGGTATCTAGCACCAGAATGGATTACTAACTATGCAATTTCGGAGAAGAGTGATGTGTTCAGCTATGGCATGCTCTTGCTTGAGATAATAGGAGGGAGGAAGAACTATGATCAATGGGAAGGGGCGGAGAAAGCACATTTTCCTTCTTATGTGTTCAGAATGATGGATGAAGGGAAACTGAAAGAGGTTCTTGATCCAAAGATAGACATTGATGAGAAGGATGAAAGGGTTGAGACTGCTCTTAAAGTTGCTCTTTGGTGCATACAAGATGACGTGAGTTTGAGGCCTTCCATGACTAAGGTAGCTCAGATGCTTGAAGGTTTGTGCCCTGTACCTGATCCCCCCTCATTATCTCAATCCGGTACTTATTCAGCTTTCATGAAATTGAGTAGTGGAGAAGCTACTTCATCGGGACAGGCTAGTTTTTTTAGTAATGTACCCATGTCATGTGTTCAATTATCAGGACCAAGATAA 2442 0.4267 MGIFRCGTLFFCVLLFFRTCCLAKDQHISQIYPGFSASQPDWRDHNGFFLLSNSSAFAFGFFTTLDVSSFVLVVMHLSSFKVVWTANRGLLVGTSDKFVFDRDGNAYLGSGNGVVWATNTTGQKVRSMELLDSGNLVLLGENGTAIWQSFSHPTDTLLPGQAFVEEMTLKSFHNSLNLCHFLSYKAGDLVLYAGYETPQVYWSLSGEQAQGSSKNNTGKVHSASLVSNSLSFFDINRALLWKVVFSEHSDPKSLWAATLDPTGAITFYDLNKGRAPNPEAVKVPQDPCGIPQPCDPYYVCFFENWCICPKLLRSRFNCKPPNISTCSRSSTELLYVGEELDYFALKYTVPVSKSNLDACKETCLGNCSCLVLFFENSTGRCFHFDQTGSFQRYKRGAGGGGYVSFMKVSISSDDGHGNKNGRNDTVLVVVIVVLTVLVIVGLITGFWYFYKRKKNVAKYPQDELDEDDDFLDSLSGMPARFTFAALCRATKDFSTKIGEGGFGSVYLGVLDDGTQLAVKKLEGVGQGAKEFKAEVSIIGSIHHVHLVKLKGFCAEGPHRLLVYEYMARGSLDKWIFKNSENTFLLNWDTRYNIAIGTAKGLAYLHEECEVRIIHCDIKPQNVLLDDNFTAKVSDFGLAKLMSREQSHVFTTLRGTRGYLAPEWITNYAISEKSDVFSYGMLLLEIIGGRKNYDQWEGAEKAHFPSYVFRMMDEGKLKEVLDPKIDIDEKDERVETALKVALWCIQDDVSLRPSMTKVAQMLEGLCPVPDPPSLSQSGTYSAFMKLSSGEATSSGQASFFSNVPMSCVQLSGPR 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04330 813 ProSiteProfiles Bulb-type lectin domain profile. 35 151 IPR001480 -
Pumo4g04330 813 ProSitePatterns Serine/Threonine protein kinases active-site signature. 612 624 IPR008271 GO:0004672|GO:0006468
Pumo4g04330 813 CDD PAN_AP_plant 347 409 - -
Pumo4g04330 813 CDD STKc_IRAK 497 764 - -
Pumo4g04330 813 Gene3D Transferase(Phosphotransferase) domain 1 566 764 - -
Pumo4g04330 813 Gene3D - 43 152 IPR036426 -
Pumo4g04330 813 SMART blect_4 41 153 IPR001480 -
Pumo4g04330 813 FunFam serine/threonine-protein kinase PBS1-like 460 565 - -
Pumo4g04330 813 Gene3D Phosphorylase Kinase; domain 1 459 565 - -
Pumo4g04330 813 ProSiteProfiles Protein kinase domain profile. 491 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g04330 813 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 204 IPR036426 -
Pumo4g04330 813 Pfam Protein kinase domain 494 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g04330 813 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 40 772 - -
Pumo4g04330 813 PIRSF SRK 4 810 IPR024171 GO:0004674
Pumo4g04330 813 ProSitePatterns Protein kinases ATP-binding region signature. 497 520 IPR017441 GO:0005524
Pumo4g04330 813 FunFam S-receptor-like kinase 5 566 770 - -
Pumo4g04330 813 ProSiteProfiles PAN/Apple domain profile. 326 397 IPR003609 -
Pumo4g04330 813 SMART serkin_6 491 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g04330 813 Pfam D-mannose binding lectin 82 165 IPR001480 -
Pumo4g04330 813 CDD B_lectin 46 153 IPR001480 -
Pumo4g04330 813 SUPERFAMILY Protein kinase-like (PK-like) 475 762 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04330 Pumo-Chr4 84291183 84294375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04330 432 771 Receptor kinase-like Gene Family AT5G20050 45.125 1.82e-92 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Pumo4g04330 Pkinase 1.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04330 - - gmx:100786024 1545.41