Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04324 ATGGCGCAAATTCTGCTCCATGGGACTCTCCATGCCACAATCTATGAAGTGGATAAGCTCAAGATTGGTGGCGGCAATTTTTTAACCAAGATCGTACAAAACATCGAGGAGACTGTTGGTATTGGAAAAGGTGTCACTAAACTATATGCAACCATTGATCTAGAGAAGGCTCGAGTGGGAAAGACCAGAATTATAGAAAAAGAGCATACTAATCCAAGATGGTACGAGTCCTTTCACATTTACTGTGCCCATATGGCATCAAACATCATATTTACAGTGAAAGATGATAATCCTATCGGGGCAACCTTAATTGGAAGAGCATATGTGCCTGTTCAGGAGATCTTGCATGGTGAAGAAATAGATAGATGGGTTGAAATATTGGATGAGCATAAAAATCCAATACATGGACATTCCAAGATCCATGTGAAGCTGCAATACTTCGATGTTTCAAAAGACCGCAACTGGGCTCTAGGCATTAGAAGTCCTAAATTTCCTGGAGTTCCTTATACTTTCTTTTCACAAAGAAGAGGATGTAAGGTTTCTCTCTACCAAGATGCTCATGTACCTGACAATTTTGTCCCTAAAATACAACTTAGTGGGGGCCAGACTTACCAGGCTCATAGATGCTGGGAGGATGTTTTCGATGCAATCACTAAAGCACAACACTTAATATACATTACTGGTTGGTCTGTCTATACTGAGATTTCGTTGGTAAGGGATTCTAGGAGGCCAAAGCCTGGAGGAGATGAAACACTTGGTGAGCTTCTCAAGAAAAAAGCAAATGAAGGCGTCAGGGTTTTAATGCTTGTCTGGGATGATAGAACTTCGGTTCCTTTGTTAAAAAAAGATGGGTTGATGGCTACACATGATCAAGAAACAGAGGAGTACTTCCGGGGCACTGAAGTGCATTGTGTTTTATGCCCTCGCAATCCTGATGATGGTGGAAGCATTGTTCAGGATTTGGAAATTTCCACCATGTTTACTCATCACCAGAAAATTGTAGTCGTGGACAGTGAATTGCCGAGTGGAGATTCTGATAAGAGAAGAATTGTGAGTTTTGTGGGGGGTATTGATCTCTGTGATGGAAGGTATGACACTCAATTCCATTCACTTTTCAGAACCCTGGACACAGCACATCATGATGACTTTCATCAGCCTAACTTTGGTGGCTCTTCAATAAAAAAAGGTGGTCCCAGGGAACCTTGGCATGACATCCACTCTCGACTTGAAGGGCCTATTGCTTGGGATGTTTTGTTCAACTTTGAGCAGAGATGGAGGAAGCAGGGAGGAAAGGACTTACTTGTTCCACTAAGAGACCTTGAAGATGTCATTATTCCCCCATCCCCAGTAACTTACCTTGATGATCATGAGACATGGAATGTTCAGTTATTTAGATCCATTGATGGTGGAGCTGCTTTTGGGTTCCCAGAGACTCCTGAAGATGCTGCCAGAGTTGGGCTTGTTAGTGGGAAGGATAATATAATAGATCGTAGCATTCAAGATGCTTATATTAATGCCATTCGACGTGCCAAAAATTTCATCTATATTGAGAATCAGTATTTCCTTGGAAGCAGTTATGATTGGAGTGCTGATGGCATTAAGCCTGAAGCCATCGATGCTTTGCATATAATCCCGAAGGAGCTTTCACTTAAGATTGTTAGTAAGATTGAAGCTGGGGAAAGGTTCAGTGTGTATGTTGTGGTTCCAATGTGGCCAGAGGGTGTGCCAGAAAGTGCATCAGTTCAGGCAATATTGGATTGGCAGAGGAGAACAATGGATATGATGTACAAAGATGTTATTGGGGCGCTCCGGGCCAAGGGAATAGAGGAAGATCCTCGCAACTATTTGACATTCTTCTGCCTTGGTAATCGAGAGGTGAAGAAACAAGGAGAGTACCAGCCTCCAGAAAGACCAGATCCTGATACAGATTATATAAGAGCCCAAGAGGCCCGGCGCTTCATGATTTATGTTCATGCCAAGATGATGATAGTTGATGATGAATACATAATCGTTGGATCTGCCAACATAAACCAGAGATCAATGGATGGTGCCAGAGACTCTGAGGTTGCGATGGGTGCTTATCAACCATATCATTTGGGTGCCAGGCAGCCTGCAAGGGGACAGATCCATGGTTTCCGCATGTCATTGTGGTATGAGCACCTTGGCTTGCTTGATGACTCCTTCCTCCACCCTGAAAGTAAAGAATGTGTTAAGAAGGTGAACCAGATTGCTGACAAGTATTGGGATCTCTATTCAAGTGAGTCACTTGAGCATGACCTTCCTGGCCACCTACTTCGCTATCCAATTGGGGTTTCCAGCGAAGGAGTTGTCACTGAGCTTCCAGGATTTGAATTCTTCCCTGACACCAAGGCCCGTGTTCTTGGTGACAAAGTTGACTACCTGCCACCCATCCTTACTACTTAG 2424 0.4348 MAQILLHGTLHATIYEVDKLKIGGGNFLTKIVQNIEETVGIGKGVTKLYATIDLEKARVGKTRIIEKEHTNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVQEILHGEEIDRWVEILDEHKNPIHGHSKIHVKLQYFDVSKDRNWALGIRSPKFPGVPYTFFSQRRGCKVSLYQDAHVPDNFVPKIQLSGGQTYQAHRCWEDVFDAITKAQHLIYITGWSVYTEISLVRDSRRPKPGGDETLGELLKKKANEGVRVLMLVWDDRTSVPLLKKDGLMATHDQETEEYFRGTEVHCVLCPRNPDDGGSIVQDLEISTMFTHHQKIVVVDSELPSGDSDKRRIVSFVGGIDLCDGRYDTQFHSLFRTLDTAHHDDFHQPNFGGSSIKKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDLLVPLRDLEDVIIPPSPVTYLDDHETWNVQLFRSIDGGAAFGFPETPEDAARVGLVSGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSSYDWSADGIKPEAIDALHIIPKELSLKIVSKIEAGERFSVYVVVPMWPEGVPESASVQAILDWQRRTMDMMYKDVIGALRAKGIEEDPRNYLTFFCLGNREVKKQGEYQPPERPDPDTDYIRAQEARRFMIYVHAKMMIVDDEYIIVGSANINQRSMDGARDSEVAMGAYQPYHLGARQPARGQIHGFRMSLWYEHLGLLDDSFLHPESKECVKKVNQIADKYWDLYSSESLEHDLPGHLLRYPIGVSSEGVVTELPGFEFFPDTKARVLGDKVDYLPPILTT 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04324 807 Pfam C2 domain 9 126 IPR000008 -
Pumo4g04324 807 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 653 680 IPR001736 GO:0003824
Pumo4g04324 807 Pfam Phospholipase D C terminal 725 796 IPR024632 -
Pumo4g04324 807 Gene3D C2 domain 6 156 IPR035892 -
Pumo4g04324 807 SUPERFAMILY Phospholipase D/nuclease 151 443 - -
Pumo4g04324 807 CDD C2_plant_PLD 2 147 - -
Pumo4g04324 807 PIRSF PLD_plant 1 807 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Pumo4g04324 807 ProSiteProfiles C2 domain profile. 1 124 IPR000008 -
Pumo4g04324 807 FunFam Phospholipase D 466 699 - -
Pumo4g04324 807 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 325 363 IPR001736 GO:0003824
Pumo4g04324 807 Gene3D Endonuclease Chain A 476 696 - -
Pumo4g04324 807 Gene3D Endonuclease Chain A 196 438 - -
Pumo4g04324 807 PANTHER PHOSPHOLIPASE D 4 796 IPR015679 -
Pumo4g04324 807 FunFam Phospholipase D delta 200 443 - -
Pumo4g04324 807 SMART C2_3c 9 123 IPR000008 -
Pumo4g04324 807 Pfam Phospholipase D Active site motif 325 363 IPR001736 GO:0003824
Pumo4g04324 807 Pfam Phospholipase D Active site motif 654 680 IPR001736 GO:0003824
Pumo4g04324 807 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 149 IPR035892 -
Pumo4g04324 807 SUPERFAMILY Phospholipase D/nuclease 441 737 - -
Pumo4g04324 807 SMART pld_4 653 680 IPR001736 GO:0003824
Pumo4g04324 807 SMART pld_4 325 363 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04324 Pumo-Chr4 84258509 84264006 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04324 1 807 Phospholipase D Gene Family (Wang group) AT3G15730 80.988 0.0 1402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04324 K01115 - gmx:100784434 1629.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g00157 7 1817261 1821748 Pumo4g04324 4 84258509 84264006 ECH
Pumo10g00076 10 1428330 1432683 Pumo4g04324 4 84258509 84264006 ECH
Pumo4g04324 4 84258509 84264006 Pumo4g04324 4 84258509 84264006 ECH
Pumo4g04324 4 84258509 84264006 Pumo7g00157 7 1817261 1821748 PCT